RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 WDR45Q9Y484 360 aa6.88□□□□□ -1.31
SCN9A-202ENST00000409435 FOXO6A8MYZ6 492 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 J3QKU1 62 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 MRPL33O75394 65 aaKnown RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 LYPLA1O75608 230 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 IFNA5P01569 189 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 RAD52P43351 418 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 ENTPD1P49961 510 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SCGB2B2Q4G0G5 96 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 FAM111BQ6SJ93 734 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SLC35F3Q8IY50 421 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 PGAM4Q8N0Y7 254 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 OR52E4Q8NGH9 312 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 TANKQ92844 425 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 INSM2Q96T92 566 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 AMBRA1Q9C0C7 1298 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 B3GNT4Q9C0J1 378 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 CHST8Q9H2A9 424 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SLC5A6Q9Y289 635 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 POM121BA6NF01 834 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SCGB2A1O75556 95 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 TGDSO95455 350 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 BMP6P22004 513 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 BST1Q10588 318 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 FBXO48Q5FWF7 155 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 FCRL6Q6DN72 434 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SPATA19Q7Z5L4 167 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 CBARPQ8N350 705 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 GTPBP8Q8N3Z3 284 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 TEX29Q8N6K0 151 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 C1orf52Q8N6N3 182 aaKnown RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 PIGXQ8TBF5 258 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 WACQ9BTA9 647 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 LRRC61Q9BV99 259 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 S1PR5Q9H228 398 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 P2RX2Q9UBL9 471 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SCP2D1Q9UJQ7 156 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 POMT1Q9Y6A1 747 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 USP3Q9Y6I4 520 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 MAGEB4O15481 346 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 MITFO75030 526 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 APOA2P02652 100 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 UNGP13051 313 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SSPNQ14714 243 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SIX1Q15475 284 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SLC23A3Q6PIS1 610 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 FJX1Q86VR8 437 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 LILRB4Q8NHJ6 448 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 CORO2AQ92828 525 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SLC38A4Q969I6 547 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 BORCS7Q96B45 105 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 HDHD5Q9BXW7 423 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SLC19A3Q9BZV2 496 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 MMP27Q9H306 513 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF395Q9H8N7 513 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-202ENST00000409435 FOLH1BQ9HBA9 442 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 LY75O60449 1722 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 ANKRD36CQ5JPF3 1778 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 ANKRD33BA6NCL7 494 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 H3BSA7 217 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 OR4F21O95013 312 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 GKN3PP0CG01 181 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 CAPN3P20807 821 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 CAMLGP49069 296 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 DCAF7P61962 342 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 LCP2Q13094 533 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 C4orf17Q53FE4 359 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SLC22A25Q6T423 547 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF627Q7L945 461 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 IRF2BP2Q7Z5L9 587 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 OR4D9Q8NGE8 314 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 OR8S1Q8NH09 359 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 FAM110BQ8TC76 370 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 PIGQQ9BRB3 760 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 UBTD1Q9HAC8 227 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 SLC6A20Q9NP91 592 aa6.87□□□□□ -1.31
SCN9A-202ENST00000409435 C21orf140B9A014 251 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 FAM72CH0Y354 149 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SULT2B1O00204 365 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 TNFRSF11BO00300 401 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 CHATP28329 748 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 RPL13AP40429 203 aaKnown RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 EFNA3P52797 238 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 GNB2P62879 340 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF616Q08AN1 781 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 GK2Q14410 553 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 KCNAB1Q14722 419 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ATXN7L3Q14CW9 347 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ISXQ2M1V0 245 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 FAM72AQ5TYM5 149 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 EEF1A1P5Q5VTE0 462 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 GLYATQ6IB77 296 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 FAM72DQ6L9T8 149 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 AADACL2Q6P093 401 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 CREB3L2Q70SY1 520 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 FAM72BQ86X60 149 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SPPL2CQ8IUH8 684 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 PLPP6Q8IY26 295 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 FRMD1Q8N878 549 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ANKRD53Q8N9V6 530 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms