RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RFX2P48378 723 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 LSSP48449 732 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 FNTBP49356 437 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 EFNA3P52797 238 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GRB7Q14451 532 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OTUD1Q5VV17 481 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 WBP2NLQ6ICG8 309 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 LEG1Q6P5S2 330 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SPRED1Q7Z699 444 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SLC5A8Q8N695 610 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SLC15A4Q8N697 577 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OR4K1Q8NGD4 311 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OR8S1Q8NH09 359 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SLC22A12Q96S37 553 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 PITX2Q99697 317 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 PATZ1Q9HBE1 687 aaKnown RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 THSD1Q9NS62 852 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CYB5R1Q9UHQ9 305 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 COL14A1Q05707 1796 aaKnown RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 RIMBP3CA6NJZ7 1639 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 RIMBP3BA6NNM3 1639 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 RIMBP3Q9UFD9 1639 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 F6UZH7 168 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 H7BY64 318 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 FANCGO15287 622 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 YKT6O15498 198 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GPR32O75388 356 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CHRM5P08912 532 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CTHP32929 405 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 NOVP48745 357 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 KCNQ1P51787 676 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 HBG1P69891 147 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 HBG2P69892 147 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 TSPAN31Q12999 210 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GPR50Q13585 617 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF266Q14584 549 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 C14orf28Q4W4Y0 310 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 HBMQ6B0K9 141 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 FIGLAQ6QHK4 219 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SMIM15Q7Z3B0 74 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 WDR5BQ86VZ2 330 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 RCBTB1Q8NDN9 531 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OR52E2Q8NGJ4 325 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 DCUN1D4Q92564 292 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ZBTB8AQ96BR9 441 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 HCAR1Q9BXC0 346 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 EPHX3Q9H6B9 360 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF286AQ9HBT8 521 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 POLE4Q9NR33 117 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GKN1Q9NS71 199 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SEMA4GQ9NTN9 838 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 NPFFR2Q9Y5X5 522 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 TRAV18A0A075B6X5 111 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ZCWPW2A0A1B0GU75 182 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ANKRD30BLA7E2S9 258 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SMLR1H3BR10 107 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GOSR2O14653 212 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 TAAR5O14804 337 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 COCHO43405 550 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 RNGTTO60942 597 aaKnown RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 MITFO75030 526 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF780AO75290 641 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 UBL3O95164 117 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SERPINA5P05154 406 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GPX3P22352 226 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CTXN1P60606 82 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 RIN1Q13671 783 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 UGT8Q16880 541 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 TXNRD3NBQ6F5E7 133 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 LRFN4Q6PJG9 635 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 Q6ZVL8 140 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 COMMD6Q7Z4G1 85 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SIAH1Q8IUQ4 282 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 KLHDC8AQ8IYD2 350 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF808Q8N4W9 903 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OR1S1Q8NH92 325 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 RAB8BQ92930 207 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 TRMT2BQ96GJ1 504 aaKnown RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CHRDQ9H2X0 955 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SCPEP1Q9HB40 452 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OR2S2Q9NQN1 319 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 C1orf123Q9NWV4 160 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 PSAT1Q9Y617 370 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 A0A0J9YY10 115 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF840PA6NDX5 716 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 GRXCR1A8MXD5 290 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 FZD9O00144 591 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 LEFTY1O75610 366 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 TRAPPC6AO75865 159 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 PIPP12273 146 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-203ENST00000409050 MAT2AP31153 395 aaKnown RBP5.75□□□□□ -1.49
SCN1A-203ENST00000409050 GDF5P43026 501 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 LMAN2Q12907 356 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 FGL2Q14314 439 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 SIX1Q15475 284 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-203ENST00000409050 FBXO48Q5FWF7 155 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 TSSK4Q6SA08 328 aa5.75□□□□□ -1.49
SCN1A-203ENST00000409050 LARP4Q71RC2 724 aaKnown RBP eCLIP5.75□□□□□ -1.49
SCN1A-203ENST00000409050 TIPARPQ7Z3E1 657 aaKnown RBP5.75□□□□□ -1.49
SCN1A-203ENST00000409050 RBM23Q86U06 439 aaKnown RBP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms