RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 C15orf38-AP3S2A0A0A6YYH1 394 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 FIGNL2A6NMB9 653 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 HMGN4O00479 90 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 STX11O75558 287 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 RNF224P0DH78 156 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 CAPN3P20807 821 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 DPP4P27487 766 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 GCKP35557 465 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 ATP12AP54707 1039 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 CRYZQ08257 329 aaKnown RBP19.74■□□□□ 0.75
CLN3-207ENST00000395653 GANABQ14697 944 aaKnown RBP19.74■□□□□ 0.75
CLN3-207ENST00000395653 VASNQ6EMK4 673 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 OR14L1PQ8NHC6 308 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 PHF10Q8WUB8 498 aaKnown RBP19.74■□□□□ 0.75
CLN3-207ENST00000395653 CCDC120Q96HB5 630 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 NMUR2Q9GZQ4 415 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 PAIP1Q9H074 479 aaKnown RBP19.74■□□□□ 0.75
CLN3-207ENST00000395653 TPT1P8Q9HAU6 139 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 POLE3Q9NRF9 147 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 MRGBPQ9NV56 204 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 TAS2R10Q9NYW0 307 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 MED11Q9P086 117 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 SLC6A5Q9Y345 797 aa19.74■□□□□ 0.75
CLN3-207ENST00000395653 ACTL6AO96019 429 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 FUT5Q11128 374 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 KLHL26Q53HC5 615 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 LRIF1Q5T3J3 769 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 AP1ARQ63HQ0 302 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 MTERF4Q7Z6M4 381 aaKnown RBP19.73■□□□□ 0.75
CLN3-207ENST00000395653 IFNEQ86WN2 208 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 OR5M9Q8NGP3 310 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 PNPT1Q8TCS8 783 aaKnown RBP19.73■□□□□ 0.75
CLN3-207ENST00000395653 ROPN1LQ96C74 230 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 DMRTA2Q96SC8 542 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 KLHL14Q9P2G3 628 aa19.73■□□□□ 0.75
CLN3-207ENST00000395653 A0A096LPI6 279 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 NPIPA5A0A0B4J1W7 369 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 A0A1W2PP18 115 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 NPIPA7E9PJI5 369 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 WDR1O75083 606 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 NPIPA8P0DM63 369 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 HOXB9P17482 250 aaPredicted RBP19.72■□□□□ 0.75
CLN3-207ENST00000395653 MSX1P28360 303 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 MVDP53602 400 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 GTDC1Q4AE62 458 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 C3P1Q6ZMU1 363 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 GATSQ8NAP1 163 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 OIT3Q8WWZ8 545 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 TIMP4Q99727 224 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 UGT2B28Q9BY64 529 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 PRDM14Q9GZV8 571 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 LIPT1Q9Y234 373 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 PCDHB14Q9Y5E9 798 aa19.72■□□□□ 0.75
CLN3-207ENST00000395653 USP9YO00507 2555 aaPredicted RBP19.72■□□□□ 0.75
CLN3-207ENST00000395653 PRAMEF27A3QJZ7 478 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 H3BNH8 94 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 ZIC3O60481 467 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 FCMRO60667 390 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 ZG16O60844 167 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 BMP7P18075 431 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 ACVR2AP27037 513 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 GFRA1P56159 465 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 GPR68Q15743 365 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 CD226Q15762 336 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 ZNF630Q2M218 657 aaPredicted RBP19.71■□□□□ 0.75
CLN3-207ENST00000395653 COX20Q5RI15 118 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.71■□□□□ 0.75
CLN3-207ENST00000395653 RPTNQ6XPR3 784 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 TSPEARQ8WU66 669 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 ABTB1Q969K4 478 aaPredicted RBP19.71■□□□□ 0.75
CLN3-207ENST00000395653 C1GALT1C1Q96EU7 318 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 AURKBQ96GD4 344 aaPredicted RBP19.71■□□□□ 0.75
CLN3-207ENST00000395653 SAP130Q9H0E3 1048 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 MKLN1Q9UL63 735 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 WDR45Q9Y484 360 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 DTNAQ9Y4J8 743 aa19.71■□□□□ 0.75
CLN3-207ENST00000395653 PTPN13Q12923 2485 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 COL12A1Q99715 3063 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 KIAA0513O60268 411 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 HOXD4P09016 255 aaPredicted RBP19.7■□□□□ 0.74
CLN3-207ENST00000395653 FREM3P0C091 2139 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 GABRA1P14867 456 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 CD1EP15812 388 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 HPCAP84074 193 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 ADORA2A-AS1P86434 159 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 ZNF141Q15928 474 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 PAGE3Q5JUK9 113 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 TYW3Q6IPR3 259 aaKnown RBP19.7■□□□□ 0.74
CLN3-207ENST00000395653 ZNF585AQ6P3V2 769 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 AAGABQ6PD74 315 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 PM20D2Q8IYS1 436 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 PHOSPHO1Q8TCT1 267 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 PSMG3-AS1Q96PY0 264 aa19.7■□□□□ 0.74
CLN3-207ENST00000395653 TRNT1Q96Q11 434 aaKnown RBP19.7■□□□□ 0.74
CLN3-207ENST00000395653 SPTAN1Q13813 2472 aaKnown RBP19.7■□□□□ 0.74
CLN3-207ENST00000395653 UGT2B17O75795 530 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 HK1P19367 917 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 CHMP24386 653 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 PTGER4P35408 488 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 GLYR1Q49A26 553 aaPredicted RBP19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms