RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 LRRC55Q6ZSA7 311 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 WDR20Q8TBZ3 569 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 PRRC1Q96M27 445 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 LAMA4Q16363 1823 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 LOC285095A0A1B0GVY8 99 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 OR2M5A3KFT3 312 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 METTL15A6NJ78 407 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 NCBP2LA6PVI3 153 aaKnown RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 G6PDP11413 515 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 RPS5P46782 204 aaKnown RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 ADIRFQ15847 76 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 TIGD5Q53EQ6 642 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 PLPPR4Q7Z2D5 763 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 BRIX1Q8TDN6 353 aaKnown RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 FAXDC2Q96IV6 333 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 BABAM2Q9NXR7 383 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 C6orf47O95873 294 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 RAB40ALP0C0E4 278 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 SULT1A2P50226 295 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 CHRNEQ04844 493 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 STK11Q15831 433 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 HGSNATQ68CP4 663 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 NANOGP8Q6NSW7 305 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 BPHLQ86WA6 291 aaPredicted RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 RAB40AQ8WXH6 277 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 LMF1Q96S06 567 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 ARV1Q9H2C2 271 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 NANOGQ9H9S0 305 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 GAB2Q9UQC2 676 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 PCDHGA9Q9Y5G4 932 aaKnown RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 MT-ND4P03905 459 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 SGSHP51688 502 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 CYP27C1Q4G0S4 372 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 TMEM97Q5BJF2 176 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 ZDHHC14Q8IZN3 488 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 MUL1Q969V5 352 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 KIAA1143Q96AT1 154 aaPredicted RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 GRXCR1A8MXD5 290 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 B4DXG7 233 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 EFNA3P52797 238 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 RAP1AP62834 184 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 TAP2Q03519 686 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 PLD6Q8N2A8 252 aaKnown RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 OSBPL2Q9H1P3 480 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 HMX1Q9NP08 348 aaPredicted RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 SIDT1Q9NXL6 827 aaKnown RBP12.74□□□□□ -0.37
USP49-203ENST00000394253 PLEK2Q9NYT0 353 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 ZDHHC2Q9UIJ5 367 aa12.74□□□□□ -0.37
USP49-203ENST00000394253 SLC31A1O15431 190 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 MGAT3Q09327 533 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 MCATQ8IVS2 390 aaKnown RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 KCTD13Q8WZ19 329 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 SYNPO2LQ9H987 977 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 KIAA1217Q5T5P2 1943 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 LOC102723971A0A1B0GUV8 181 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 SUSD5O60279 629 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 ATP1B2P14415 290 aaPredicted RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 OR1D2P34982 312 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 OPRL1P41146 370 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 PCBP2Q15366 365 aaKnown RBP eCLIP12.73□□□□□ -0.37
USP49-203ENST00000394253 GRIK5Q16478 980 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 GDPD4Q6W3E5 623 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 MRPL38Q96DV4 380 aaKnown RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 PDCD2LQ9BRP1 358 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 RDH14Q9HBH5 336 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 SMOXQ9NWM0 555 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 NENFQ9UMX5 172 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 CLTCQ00610 1675 aaKnown RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 ABCA6Q8N139 1617 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 SURF4O15260 269 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 CILPO75339 1184 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 CYP1B1Q16678 543 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 CES4AQ5XG92 561 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 OR1S2Q8NGQ3 325 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 SH3YL1Q96HL8 342 aaPredicted RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 TSGA13Q96PP4 275 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 POM121CA8CG34 1229 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 F10P00742 488 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 SHMT1P34896 483 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 VAMP8Q9BV40 100 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 MMP28Q9H239 520 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 DDCP20711 480 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 BAK1Q16611 211 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 CMPK2Q5EBM0 449 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 OR4F6Q8NGB9 312 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 GPR148Q8TDV2 347 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 C2orf15Q8WU43 125 aaKnown RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 MMABQ96EY8 250 aaPredicted RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 ZNF599Q96NL3 588 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 RPH3ALQ9UNE2 315 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 AKAP12Q02952 1782 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 HNF1AP20823 631 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 NKX6-2Q9C056 277 aaPredicted RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 ACOXLQ9NUZ1 547 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 ZFP37Q9Y6Q3 630 aaPredicted RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 TMEM72A0PK05 275 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 RPS18P62269 152 aaKnown RBP12.73□□□□□ -0.37
USP49-203ENST00000394253 CARD17Q5XLA6 110 aa12.73□□□□□ -0.37
USP49-203ENST00000394253 ANKRD53Q8N9V6 530 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms