RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 CORO1AP31146 461 aaKnown RBP13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 LSM11P83369 360 aaKnown RBP eCLIP13.72□□□□□ -0.211e-6■■■□□ 15.6
VPS9D1-201ENST00000389386 ZNF660Q6AZW8 331 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 SFRP4Q6FHJ7 346 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 ADNP2Q6IQ32 1131 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 CAMKVQ8NCB2 501 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 GPR156Q8NFN8 814 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 OR52N1Q8NH53 320 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 CXorf40BQ96DE9 158 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 ATG10Q9H0Y0 220 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 REEP4Q9H6H4 257 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 TEX10Q9NXF1 929 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 MARK1Q9P0L2 795 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 SEC14L3Q9UDX4 400 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 MRTO4Q9UKD2 239 aaKnown RBP13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 PCOLCE2Q9UKZ9 415 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 PCDHB9Q9Y5E1 797 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 DOCK6Q96HP0 2047 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 A0A0G2JK05 382 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 EN2P19622 333 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 SMIM11AP58511 58 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 PFN3P60673 137 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 MC2RQ01718 297 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 NDUFA9Q16795 377 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 GNPDA2Q8TDQ7 276 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 TOX2Q96NM4 488 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 SMG9Q9H0W8 520 aaKnown RBP13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 MTG2Q9H4K7 406 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 SCN8AQ9UQD0 1980 aa13.72□□□□□ -0.21
VPS9D1-201ENST00000389386 ZNF840PA6NDX5 716 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 LRRN3E7EW58 273 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 GPR37L1O60883 481 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 HIST1H2ABP04908 130 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 FABP1P07148 127 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 ZDHHC11BP0C7U3 371 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 TYRP14679 529 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 RAB3BP20337 219 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 MST1P26927 711 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 GDI2P50395 445 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 RING1Q06587 406 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 TWF1Q12792 350 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 SERTAD2Q14140 314 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 ZNF322Q6U7Q0 402 aaPredicted RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 GSG1LQ6UXU4 331 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 HIST3H2AQ7L7L0 130 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 MRGPREQ86SM8 312 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 LRRC56Q8IYG6 542 aaPredicted RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 ASB11Q8WXH4 323 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 HIST1H2ACQ93077 130 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 SLC22A12Q96S37 553 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 TMEM106CQ9BVX2 250 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 BTBD1Q9H0C5 482 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 ARL6Q9H0F7 186 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 OR10A4Q9H209 315 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 LRRN3Q9H3W5 708 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 ELAC1Q9H777 363 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 SIRT4Q9Y6E7 314 aaPredicted RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 HMSDA8MTL9 139 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 ARPC5O15511 151 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 PSMB1P20618 241 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 TIA1P31483 386 aaKnown RBP eCLIP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 CCR7P32248 378 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 RAD52P43351 418 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 MAPK9P45984 424 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 RNF144AP50876 292 aaPredicted RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 PSMA6P60900 246 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 DEFB103AP81534 67 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 PITPNAQ00169 270 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 PIN1Q13526 163 aaPredicted RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 SMAD2Q15796 467 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 ENTPD8Q5MY95 495 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 MTFR2Q6P444 385 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 CPXM2Q8N436 756 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 FAM98AQ8NCA5 519 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 BPIFCQ8NFQ6 507 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 OR4K5Q8NGD3 323 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 KAT2AQ92830 837 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 RGMAQ96B86 450 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 IFT27Q9BW83 186 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 EGLN3Q9H6Z9 239 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 EQTNQ9NQ60 294 aa13.71□□□□□ -0.21
VPS9D1-201ENST00000389386 PRR23D1E9PI22 279 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 H7C4K7 107 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 UGDHO60701 494 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 STC2O76061 302 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 RASGRP1O95267 797 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 PRR23D2P0DMB1 279 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 CPN1P15169 458 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 CDH11P55287 796 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 MC1RQ01726 317 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 MELKQ14680 651 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 FAM27D1Q5T7N8 215 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 ZC3H14Q6PJT7 736 aaKnown RBP13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 CRIPAKQ8N1N5 446 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 OR1M1Q8NGA1 313 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 OR6K2Q8NGY2 324 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 SLC38A5Q8WUX1 472 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 EPHA6Q9UF33 1036 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 CRLS1Q9UJA2 301 aa13.7□□□□□ -0.22
VPS9D1-201ENST00000389386 CLEC4AQ9UMR7 237 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms