RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 NPIPA7E9PJI5 369 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 STX11O75558 287 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 NPIPA8P0DM63 369 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 HTR2AP28223 471 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 COPZ1P61923 177 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 SHC2P98077 582 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 ILF3Q12906 894 aaKnown RBP eCLIP20.26■□□□□ 0.836e-6■□□□□ 10.2
SHMT1-202ENST00000352886 BAK1Q16611 211 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 MRPL2Q5T653 305 aaKnown RBP20.26■□□□□ 0.83
SHMT1-202ENST00000352886 NXNL2Q5VZ03 156 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 Q6ZSR6 202 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 SFTPA2Q8IWL1 248 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 SRRQ9GZT4 340 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 CBLCQ9ULV8 474 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 CEP290O15078 2479 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 A0A1W2PQL4 384 aaPredicted RBP20.26■□□□□ 0.83
SHMT1-202ENST00000352886 PEX12O00623 359 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 ATP1B1P05026 303 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 HTR4Q13639 388 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 DSG2Q14126 1118 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 WDR88Q6ZMY6 472 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 COX18Q8N8Q8 333 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 BAHD1Q8TBE0 780 aaPredicted RBP20.26■□□□□ 0.83
SHMT1-202ENST00000352886 OTULINQ96BN8 352 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 MSLNLQ96KJ4 702 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 KATNB1Q9BVA0 655 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 DPH1Q9BZG8 443 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 MIXL1Q9H2W2 232 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 HINT3Q9NQE9 182 aaKnown RBP20.26■□□□□ 0.83
SHMT1-202ENST00000352886 KCNE5Q9UJ90 142 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 PIAS3Q9Y6X2 628 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 SPACA6W5XKT8 324 aa20.26■□□□□ 0.83
SHMT1-202ENST00000352886 TRAPPC13A5PLN9 417 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 FAM183AA6NL82 134 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 C2orf74A8MZ97 194 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 DBIP07108 87 aaKnown RBP20.25■□□□□ 0.83
SHMT1-202ENST00000352886 RPS4Y1P22090 263 aaKnown RBP20.25■□□□□ 0.83
SHMT1-202ENST00000352886 HTR1FP30939 366 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 ATP6V1E1P36543 226 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 GALNT6Q8NCL4 622 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 PSD4Q8NDX1 1056 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 RPLP0P6Q8NHW5 317 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 MED18Q9BUE0 208 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 UBQLN3Q9H347 655 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 TIGARQ9NQ88 270 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 CPNE7Q9UBL6 633 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 GSTK1Q9Y2Q3 226 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 NID1P14543 1247 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 FUT1P19526 365 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 AKT2P31751 481 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 EXOSC7Q15024 291 aaKnown RBP20.25■□□□□ 0.83
SHMT1-202ENST00000352886 FIGNL1Q6PIW4 674 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 NRARPQ7Z6K4 114 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 CPOQ8IVL8 374 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 CDRT4Q8N9R6 151 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 SETD6Q8TBK2 473 aa20.25■□□□□ 0.83
SHMT1-202ENST00000352886 H2AFY2Q9P0M6 372 aaPredicted RBP20.25■□□□□ 0.83
SHMT1-202ENST00000352886 EXOGQ9Y2C4 368 aaKnown RBP20.25■□□□□ 0.83
SHMT1-202ENST00000352886 HTR3EA5X5Y0 456 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 CYR61O00622 381 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 SOCS6O14544 535 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 PLOD3O60568 738 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 HMGN1P05114 100 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 ZGLP1P0C6A0 271 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 YPEL5P62699 121 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 ZNF155Q12901 538 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-202ENST00000352886 ADAM15Q13444 863 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 OR1Q1Q15612 314 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 ZNF791Q3KP31 576 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-202ENST00000352886 EXOSC6Q5RKV6 272 aaKnown RBP20.24■□□□□ 0.83
SHMT1-202ENST00000352886 CD200R1LQ6Q8B3 271 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 FAM131AQ6UXB0 335 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 IL17RDQ8NFM7 739 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 PFN4Q8NHR9 129 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 SECISBP2Q96T21 854 aaKnown RBP20.24■□□□□ 0.83
SHMT1-202ENST00000352886 ZNF649Q9BS31 505 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 OR52D1Q9H346 318 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 TCEAL2Q9H3H9 227 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-202ENST00000352886 DUSP22Q9NRW4 184 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 HRASLS2Q9NWW9 162 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 MSRAQ9UJ68 235 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 SATB2Q9UPW6 733 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 A0A087WV62 115 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 GPR75O95800 540 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 IGHA1P01876 353 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 IL7P13232 177 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 DRD1P21728 446 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 FGF9P31371 208 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-202ENST00000352886 PRICKLE4Q2TBC4 344 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 ARMC4Q5T2S8 1044 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 TMEM53Q6P2H8 277 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 KLHL36Q8N4N3 616 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 CAMKK1Q8N5S9 505 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 ZNF655Q8N720 491 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-202ENST00000352886 IL21RQ9HBE5 538 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 C20orf141Q9NUB4 165 aa20.24■□□□□ 0.83
SHMT1-202ENST00000352886 TCRBV21S2A2A0A5A6 115 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 CDHR4A6H8M9 788 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 UNC119BA6NIH7 251 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 CT62P0C5K7 136 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms