RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 A6NHS1 94 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 BCAS1O75363 584 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-202ENST00000338045 SEC24DO94855 1032 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-202ENST00000338045 CYP4B1P13584 511 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 AGXTP21549 392 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 HOXC5Q00444 222 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 SPEM2Q0P670 501 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 FOXD4Q12950 439 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-202ENST00000338045 RAPSNQ13702 412 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 PGBD2Q6P3X8 592 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 ZNF517Q6ZMY9 492 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-202ENST00000338045 ZNF786Q8N393 782 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 TOR1AIP2Q8NFQ8 470 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 SLC35B4Q969S0 331 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 CDC6Q99741 560 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 DGCR6LQ9BY27 220 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 WDR54Q9H977 334 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 AKIRIN1Q9H9L7 192 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-202ENST00000338045 CTPS2Q9NRF8 586 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 AKAP7Q9P0M2 348 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-202ENST00000338045 COPS7AQ9UBW8 275 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 ENOPH1Q9UHY7 261 aa14.28□□□□□ -0.12
LIMS1-202ENST00000338045 PPIEQ9UNP9 301 aaKnown RBP14.28□□□□□ -0.12
LIMS1-202ENST00000338045 C2orf92A0A1B0GVN3 265 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 CPSF4LA6NMK7 179 aaKnown RBP14.27□□□□□ -0.12
LIMS1-202ENST00000338045 TO15178 435 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 OR10H3O60404 316 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 IL33O95760 270 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 THY1P04216 161 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 PRG2P13727 222 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 IFNA8P32881 189 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 EMP2P54851 167 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 RPP38P78345 283 aaKnown RBP14.27□□□□□ -0.12
LIMS1-202ENST00000338045 INSM1Q01101 510 aaPredicted RBP14.27□□□□□ -0.12
LIMS1-202ENST00000338045 CD47Q08722 323 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 FGFBP1Q14512 234 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 TRAM2Q15035 370 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 DECR1Q16698 335 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 FAAH2Q6GMR7 532 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 KLHL17Q6TDP4 642 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 PLEKHM3Q6ZWE6 761 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 RANBP3LQ86VV4 465 aaPredicted RBP14.27□□□□□ -0.12
LIMS1-202ENST00000338045 CMIPQ8IY22 773 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 ZNF441Q8N8Z8 693 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 SETD9Q8NE22 299 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 C17orf47Q8NEP4 570 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 NFAM1Q8NET5 270 aaPredicted RBP14.27□□□□□ -0.12
LIMS1-202ENST00000338045 PMEPA1Q969W9 287 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 GTPBP3Q969Y2 492 aaKnown RBP14.27□□□□□ -0.12
LIMS1-202ENST00000338045 LMF1Q96S06 567 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 SEMA4CQ9C0C4 833 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.27□□□□□ -0.12
LIMS1-202ENST00000338045 SLC39A1Q9NY26 324 aa14.27□□□□□ -0.12
LIMS1-202ENST00000338045 A0A087WUU8 490 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 SAGE2PA6NJ88 616 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 RFPL3O75679 317 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 HTR2AP28223 471 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 CSRP2Q16527 193 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 CTU2Q2VPK5 515 aaKnown RBP14.27□□□□□ -0.13
LIMS1-202ENST00000338045 CDCP2Q5VXM1 449 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 TMEM205Q6UW68 189 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 CD300LDQ6UXZ3 194 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 OR4K5Q8NGD3 323 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 OR4C3Q8NH37 302 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 METTL21AQ8WXB1 218 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 CNOT9Q92600 299 aaKnown RBP14.27□□□□□ -0.13
LIMS1-202ENST00000338045 SLC38A4Q969I6 547 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 MRPS26Q9BYN8 205 aaKnown RBP14.27□□□□□ -0.13
LIMS1-202ENST00000338045 WWTR1Q9GZV5 400 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 ING2Q9H160 280 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 TESQ9UGI8 421 aaKnown RBP14.27□□□□□ -0.13
LIMS1-202ENST00000338045 NXT1Q9UKK6 140 aaKnown RBP14.27□□□□□ -0.13
LIMS1-202ENST00000338045 NTNG1Q9Y2I2 539 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 GMPPBQ9Y5P6 360 aa14.27□□□□□ -0.13
LIMS1-202ENST00000338045 DPPA5A6NC42 116 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 TMX2-CTNND1H3BSU7 103 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 SMNDC1O75940 238 aaKnown RBP eCLIP14.26□□□□□ -0.13
LIMS1-202ENST00000338045 KLK3P07288 261 aaPredicted RBP14.26□□□□□ -0.13
LIMS1-202ENST00000338045 GKN3PP0CG01 181 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 POU2F1P14859 743 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 LCN1P31025 176 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 SLC5A2P31639 672 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 TPD52P55327 224 aaPredicted RBP14.26□□□□□ -0.13
LIMS1-202ENST00000338045 ESRRGP62508 458 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 TCF15Q12870 199 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 LAIR2Q6ISS4 152 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 C1orf94Q6P1W5 598 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 SLC29A4Q7RTT9 530 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 GDF7Q7Z4P5 450 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 SLCO6A1Q86UG4 719 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 CCDC71Q8IV32 467 aaPredicted RBP14.26□□□□□ -0.13
LIMS1-202ENST00000338045 SLC41A3Q96GZ6 507 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 APOL4Q9BPW4 351 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 WDR77Q9BQA1 342 aaPredicted RBP14.26□□□□□ -0.13
LIMS1-202ENST00000338045 CRB3Q9BUF7 120 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 ULBP3Q9BZM4 244 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 STRADBQ9C0K7 418 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 HOXD1Q9GZZ0 328 aa14.26□□□□□ -0.13
LIMS1-202ENST00000338045 DNAJB12Q9NXW2 375 aaKnown RBP14.26□□□□□ -0.13
LIMS1-202ENST00000338045 REV1Q9UBZ9 1251 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms