RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 LMF1Q96S06 567 aa12.48□□□□□ -0.41
COL2A1-201ENST00000337299 DPH1Q9BZG8 443 aa12.48□□□□□ -0.41
COL2A1-201ENST00000337299 DNTTIP1Q9H147 329 aa12.48□□□□□ -0.41
COL2A1-201ENST00000337299 GTPBP1O00178 669 aaKnown RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 CBX7O95931 251 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 CYB5AP00167 134 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 SFTPBP07988 381 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 ZNF865P0CJ78 1059 aaPredicted RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 FOSL1P15407 271 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 ITPKBP27987 946 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 LUMP51884 338 aaPredicted RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 GOLGB1Q14789 3259 aaKnown RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 UNQ6126/PRO20091Q6UXV3 157 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 OR2AP1Q8NGE2 309 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 MFSD8Q8NHS3 518 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 OR5P2Q8WZ92 322 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 NR4A3Q92570 626 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 FOXJ1Q92949 421 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 ZNF649Q9BS31 505 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 TGIF2Q9GZN2 237 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 C20orf85Q9H1P6 137 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 NDUFB11Q9NX14 153 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 TRAPPC4Q9Y296 219 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 SLC45A1Q9Y2W3 748 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 RAD1O60671 282 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 CLLU1Q5K131 121 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 FAM27D1Q5T7N8 215 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 PIP5KL1Q5T9C9 394 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 HBMQ6B0K9 141 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 CHCHD4Q8N4Q1 142 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 OR4K13Q8NH42 304 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 ELP4Q96EB1 424 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 FUBP3Q96I24 572 aaKnown RBP eCLIP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 TRIM2Q9C040 744 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 ACER3Q9NUN7 267 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 DIMT1Q9UNQ2 313 aaKnown RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 MRPS23Q9Y3D9 190 aaKnown RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 ZNF175Q9Y473 711 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 BRWD1Q9NSI6 2320 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 TBC1D3BA6NDS4 549 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 GPR32O75388 356 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 ITGBL1O95965 494 aaPredicted RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 SPARCP09486 303 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 AK4P27144 223 aaPredicted RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 CD34P28906 385 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 MAT2AP31153 395 aaKnown RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 MPIP34949 423 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 FNDC3BQ53EP0 1204 aaKnown RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 C1orf189Q5VU69 101 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 ZNF529Q6P280 563 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 FAHD1Q6P587 224 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 QSOX2Q6ZRP7 698 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 WDR53Q7Z5U6 358 aaPredicted RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 OR10G6Q8NH81 332 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 APH1BQ8WW43 257 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 SUSD3Q96L08 255 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 PITX2Q99697 317 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 POTEKPQ9BYX7 375 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 SLC6A16Q9GZN6 736 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 TMEM231Q9H6L2 316 aa12.47□□□□□ -0.41
COL2A1-201ENST00000337299 DDX60LQ5H9U9 1706 aaKnown RBP12.47□□□□□ -0.41
COL2A1-201ENST00000337299 POP4O95707 220 aaKnown RBP12.46□□□□□ -0.41
COL2A1-201ENST00000337299 DCNP07585 359 aaKnown RBP12.46□□□□□ -0.41
COL2A1-201ENST00000337299 RBMS1P29558 406 aaKnown RBP12.46□□□□□ -0.41
COL2A1-201ENST00000337299 CCR7P32248 378 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 CLCN7P51798 805 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 EIF5AP63241 154 aaKnown RBP12.46□□□□□ -0.41
COL2A1-201ENST00000337299 ZNF155Q12901 538 aaPredicted RBP12.46□□□□□ -0.41
COL2A1-201ENST00000337299 GAS6Q14393 721 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 RBM39Q14498 530 aaKnown RBP12.46□□□□□ -0.41
COL2A1-201ENST00000337299 PEA15Q15121 130 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 SYT14P1Q58G82 188 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 AVPI1Q5T686 147 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 C8orf82Q6P1X6 216 aaPredicted RBP12.46□□□□□ -0.41
COL2A1-201ENST00000337299 HORMAD2Q8N7B1 307 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 CLRN3Q8NCR9 226 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 OR7G2Q8NG99 324 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 SCARB1Q8WTV0 552 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 GABARAPL3Q9BY60 117 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 GABARAPL1Q9H0R8 117 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 TMEM30AQ9NV96 361 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 GPN3Q9UHW5 284 aaPredicted RBP12.46□□□□□ -0.41
COL2A1-201ENST00000337299 SLC27A6Q9Y2P4 619 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 BLOC1S5-TXNDC5H3BN57 136 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 SOCS6O14544 535 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 GPR171O14626 319 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 CHP2O43745 196 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 C1GALT1C1LP0DN25 315 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 AHCYP23526 432 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 PSMA3P25788 255 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 ILKQ13418 452 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 ARFRP1Q13795 201 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 PUM1Q14671 1186 aaKnown RBP eCLIP12.46□□□□□ -0.41
COL2A1-201ENST00000337299 OR5M10Q6IEU7 315 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 H3F3CQ6NXT2 135 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 TRIM46Q7Z4K8 759 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 OOSP2Q86WS3 158 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 OR52E4Q8NGH9 312 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 LGALS14Q8TCE9 139 aa12.46□□□□□ -0.41
COL2A1-201ENST00000337299 UCN3Q969E3 161 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms