RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 PAPOLGQ9BWT3 736 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 EGFL7Q9UHF1 273 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CACNA1GO43497 2377 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 LOC102723532A0A0G2JNH3 316 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF705EA8MWA4 302 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 UBFD1O14562 309 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SCAMP3O14828 347 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SCO2O43819 266 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 VNN1O95497 513 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 HTR1AP08908 422 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 NUDT7P0C024 238 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 AKAIN1P0CW23 69 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SPI1P17947 270 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 LAG3P18627 525 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ITGB7P26010 798 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CCR9P51686 369 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 TSTQ16762 297 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GSG1LQ6UXU4 331 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 RHOUQ7L0Q8 258 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 OVCH1Q7RTY7 1134 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 COMMD7Q86VX2 200 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GPC2Q8N158 579 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 NRG4Q8WWG1 115 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SHDQ96IW2 340 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 LMF2Q9BU23 707 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SLC12A9Q9BXP2 914 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 EXTL2Q9UBQ6 330 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GPR160Q9UJ42 338 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 OSGIN1Q9UJX0 560 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ASF1AQ9Y294 204 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 YDJCA8MPS7 323 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 F5H5P2 479 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 H0YIV9 168 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ONECUT3O60422 494 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CDK14O94921 469 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 DIRAS3O95661 229 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CFIP05156 583 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 HEXBP07686 556 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 S1PR1P21453 382 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CTSOP43234 321 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF136P52737 540 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 LILRA4P59901 499 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 HTRA4P83105 476 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CSTF1Q05048 431 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ADGRF1Q5T601 910 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CGB2Q6NT52 195 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 LYSMD2Q8IV50 215 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 FAM185AQ8N0U4 392 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SLAIN1Q8ND83 568 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 OR4K17Q8NGC6 315 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ZFPM2Q8WW38 1151 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ECHDC3Q96DC8 303 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 AMDHD1Q96NU7 426 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GSTO2Q9H4Y5 243 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GCM1Q9NP62 436 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 FZD3Q9NPG1 666 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 BRD7Q9NPI1 651 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SPANXA1Q9NS26 97 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SUSD2Q9UGT4 822 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 DNAJC15Q9Y5T4 150 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 hCG_1809904A0A1W2PP81 198 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 A0A1W2PPE2 198 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 A0A1W2PR64 198 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 A0A1W2PRV1 198 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF749O43361 778 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 KDELR3O43731 214 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CSF2P04141 144 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 RPS19P39019 145 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SP2Q02086 613 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 IL10RAQ13651 578 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CHRNA6Q15825 494 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 Q1RN00 199 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 YIF1BQ5BJH7 314 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 FUT10Q6P4F1 479 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 TRMT10BQ6PF06 316 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 VTCN1Q7Z7D3 282 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 KIAA0907Q7Z7F0 614 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF584Q8IVC4 421 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 BEST3Q8N1M1 668 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GTPBP8Q8N3Z3 284 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 TCEANCQ8N8B7 351 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 C3orf49Q96BT1 292 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 PDCD1LG2Q9BQ51 273 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ORAI3Q9BRQ5 295 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SLC35A5Q9BS91 424 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 TSSK6Q9BXA6 273 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ELP3Q9H9T3 547 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 KLRF1Q9NZS2 232 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ELOA3CA0A087WX78 387 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 A0A1W2PPL8 197 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 OR2M5A3KFT3 312 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 MTMR11A4FU01 709 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 H7BY64 318 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 NME4O00746 187 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GOT2P00505 430 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CHRM2P08172 466 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 EDNRBP24530 442 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GABRB3P28472 473 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 MEOX1P50221 254 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SSX1Q16384 188 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms