RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 FANK1Q8TC84 345 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 CLP1Q92989 425 aaKnown RBP12.61□□□□□ -0.39
SKA3-201ENST00000298260 ZNF354BQ96LW1 612 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 KLK11Q9UBX7 282 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 SPTBP11277 2137 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 A0A0G2JN53 185 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 AIPO00170 330 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 UBXN7O94888 489 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 VNN2O95498 520 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 ATF1P18846 271 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 PDHA2P29803 388 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 ATP5C1P36542 298 aaKnown RBP12.61□□□□□ -0.39
SKA3-201ENST00000298260 SLC16A1P53985 500 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 PRKAG1P54619 331 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 C21orf58P58505 322 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 SLBPQ14493 270 aaKnown RBP eCLIP12.61□□□□□ -0.39
SKA3-201ENST00000298260 DEFB115Q30KQ5 88 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 PIP5KL1Q5T9C9 394 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 GRHL2Q6ISB3 625 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 FGD2Q7Z6J4 655 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 OR5M1Q8NGP8 315 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 OR56B4Q8NH76 319 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 CHFRQ96EP1 664 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 TIMP4Q99727 224 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 EXOSC3Q9NQT5 275 aaKnown RBP12.61□□□□□ -0.39
SKA3-201ENST00000298260 ACTR10Q9NZ32 417 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 NFKBIL1Q9UBC1 381 aaPredicted RBP12.61□□□□□ -0.39
SKA3-201ENST00000298260 TRPC4Q9UBN4 977 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 NPTNQ9Y639 398 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 CPSF4LA6NMK7 179 aaKnown RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 H0YIV9 168 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 COCHO43405 550 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 SDC3O75056 442 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 ADH7P40394 386 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 CCR8P51685 355 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 MANFP55145 182 aaKnown RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 PSMA6P60900 246 aaKnown RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 PTSQ03393 145 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 GDF6Q6KF10 455 aaPredicted RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 CBLN2Q8IUK8 224 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 PXYLP1Q8TE99 480 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 ZG16BQ96DA0 208 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 HCAR1Q9BXC0 346 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 MLXQ9UH92 298 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 FAM170BA6NMN3 283 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 F8W036 122 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 STC2O76061 302 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 CBSLP0DN79 551 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 MST1P26927 711 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 MAOBP27338 520 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 IMPA1P29218 277 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 CCND3P30281 292 aaPredicted RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 CBSP35520 551 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 GDI2P50395 445 aaKnown RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 CNTN1Q12860 1018 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 FCRLBQ6BAA4 426 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 FAM71E1Q6IPT2 247 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 LINGO2Q7L985 606 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 C6orf120Q7Z4R8 191 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 HDDC3Q8N4P3 179 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 CD99L2Q8TCZ2 262 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 EXOSC8Q96B26 276 aaKnown RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 SLC6A20Q9NP91 592 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 HINT3Q9NQE9 182 aaKnown RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 WSB2Q9NYS7 404 aaPredicted RBP12.6□□□□□ -0.39
SKA3-201ENST00000298260 CBLCQ9ULV8 474 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 CLEC4EQ9ULY5 219 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 PCDHB8Q9UN66 801 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 TRPV2Q9Y5S1 764 aa12.6□□□□□ -0.39
SKA3-201ENST00000298260 AGAP14A8MT82 685 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 GPR31O00270 319 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 THPOP40225 353 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 RNF144AP50876 292 aaPredicted RBP12.59□□□□□ -0.39
SKA3-201ENST00000298260 KLF9Q13886 244 aaPredicted RBP12.59□□□□□ -0.39
SKA3-201ENST00000298260 RPE65Q16518 533 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 GPR33Q49SQ1 333 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 PLBD1Q6P4A8 553 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 TMUB2Q71RG4 321 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 POGLUT1Q8NBL1 392 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 OR10H4Q8NGA5 316 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 MYLIPQ8WY64 445 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 ACOT12Q8WYK0 555 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 GINS4Q9BRT9 223 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 AP1M2Q9Y6Q5 423 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 UNC80Q8N2C7 3258 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 ANTXRLA6NF34 631 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 F12P00748 615 aaPredicted RBP12.59□□□□□ -0.39
SKA3-201ENST00000298260 S100A11P31949 105 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 MAGEB1P43366 347 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 MTNR1BP49286 362 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 FLI1Q01543 452 aaPredicted RBP12.59□□□□□ -0.39
SKA3-201ENST00000298260 MC2RQ01718 297 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 PLD1Q13393 1074 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 APOOLQ6UXV4 268 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 MEIOBQ8N635 442 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 LRIG1Q96JA1 1093 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 PELOQ9BRX2 385 aaKnown RBP12.59□□□□□ -0.39
SKA3-201ENST00000298260 GPR62Q9BZJ7 368 aa12.59□□□□□ -0.39
SKA3-201ENST00000298260 CXXC1Q9P0U4 656 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms