RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 B3GALT2O43825 422 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 CYB5AP00167 134 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 ZNF823P16415 610 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 CCR7P32248 378 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 AHRP35869 848 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 PRKXP51817 358 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 TAGLNQ01995 201 aaKnown RBP14.46□□□□□ -0.09
SHH-201ENST00000297261 GAS6Q14393 721 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 ZNF776Q68DI1 518 aaPredicted RBP14.46□□□□□ -0.09
SHH-201ENST00000297261 PODNL1Q6PEZ8 512 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 SBSNQ6UWP8 590 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 USP51Q70EK9 711 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 ZNF101Q8IZC7 436 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 KCNN3Q9UGI6 736 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 WASH3PC4AMC7 463 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 H3BNC9 293 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 KCNK2O95069 426 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 HOXB2P14652 356 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 PRKCAP17252 672 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 NPR2P20594 1047 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 AK4P27144 223 aaPredicted RBP14.46□□□□□ -0.09
SHH-201ENST00000297261 SLC19A1P41440 591 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 TRAM1Q15629 374 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 ZMAT1Q5H9K5 638 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 RTL10Q7L3V2 364 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 ZDHHC1Q8WTX9 485 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 MAFIPQ8WZ33 124 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 YIPF6Q96EC8 236 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 DOK1Q99704 481 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 C7orf50Q9BRJ6 194 aaKnown RBP14.46□□□□□ -0.09
SHH-201ENST00000297261 AIFM2Q9BRQ8 373 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 POTEKPQ9BYX7 375 aa14.46□□□□□ -0.09
SHH-201ENST00000297261 A0A1W2PPL8 197 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 RNASET2O00584 256 aaKnown RBP14.46□□□□□ -0.1
SHH-201ENST00000297261 GABRPO00591 440 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 JUNDP17535 347 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 P2RX3P56373 397 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 RAB5BP61020 215 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 NXNL2Q5VZ03 156 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 NEIL2Q969S2 332 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 MAP6Q96JE9 813 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 MUTYHQ9UIF7 546 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 NEU3Q9UQ49 428 aa14.46□□□□□ -0.1
SHH-201ENST00000297261 UNC119BA6NIH7 251 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 EEF1E1-BLOC1S5C9J1V9 151 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 WRBO00258 174 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 RENP00797 406 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 FAM78AQ5JUQ0 283 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 DCUN1D3Q8IWE4 304 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 CLDN22Q8N7P3 220 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 LMNTD1Q8N9Z9 388 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 NUP43Q8NFH3 380 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 GIMAP1Q8WWP7 306 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 OR2M2Q96R28 347 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 KCNK6Q9Y257 313 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 EIF3FO00303 357 aaPredicted RBP14.45□□□□□ -0.1
SHH-201ENST00000297261 GOSR2O14653 212 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 CSO75390 466 aaKnown RBP14.45□□□□□ -0.1
SHH-201ENST00000297261 MAS1P04201 325 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 NKG7Q16617 165 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 MINDY4Q4G0A6 757 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 ACSM3Q53FZ2 586 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 LRRC28Q86X40 367 aaPredicted RBP14.45□□□□□ -0.1
SHH-201ENST00000297261 DNAJA3Q96EY1 480 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 GAL3ST4Q96RP7 486 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 PLEKHA1Q9HB21 404 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 RCE1Q9Y256 329 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 TMEM5Q9Y2B1 443 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 ZNF860A6NHJ4 632 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 SLC43A1O75387 559 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 SNAPC5O75971 98 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 SCGB1D2O95969 90 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 AGR2O95994 175 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 TIMP2P16035 220 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 PSPHP78330 225 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 OPCMLQ14982 345 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 TP53I3Q53FA7 332 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 GRHL2Q6ISB3 625 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 LYPD4Q6UWN0 246 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 PARS2Q7L3T8 475 aaKnown RBP14.45□□□□□ -0.1
SHH-201ENST00000297261 OR6N2Q8NGY6 317 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 OR4K13Q8NH42 304 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 LKAAEAR1Q8TD35 194 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 SLC6A16Q9GZN6 736 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 ZNF700Q9H0M5 742 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 ATG5Q9H1Y0 275 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 SYT4Q9H2B2 425 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 ASF1BQ9NVP2 202 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 B4DXG7 233 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 C1QBP02746 253 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 ADRB3P13945 408 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 MAPK3P27361 379 aaPredicted RBP14.45□□□□□ -0.1
SHH-201ENST00000297261 GRK5P34947 590 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 GZMKP49863 264 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 ACVR1Q04771 509 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 BAK1Q16611 211 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 PLK5Q496M5 336 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 MLIPQ5VWP3 458 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 NXPE4Q6UWF7 544 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 Q6ZNB5 142 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms