RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ZAR1Q86SH2 424 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 PFN4Q8NHR9 129 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 RSC1A1Q92681 617 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 OTULINQ96BN8 352 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 IL21RQ9HBE5 538 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 FAM60AQ9NP50 221 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 POT1Q9NUX5 634 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 MAT2BQ9NZL9 334 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 A0A0J9YY10 115 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 TMEM129A0AVI4 362 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 GCGRP47871 477 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 EIF2B5Q13144 721 aaKnown RBP18.66■□□□□ 0.58
VPS53-201ENST00000291074 PRICKLE4Q2TBC4 344 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 ZC3H14Q6PJT7 736 aaKnown RBP18.66■□□□□ 0.58
VPS53-201ENST00000291074 RNF44Q7L0R7 432 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 CA13Q8N1Q1 262 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 CPNE5Q9HCH3 593 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 C20orf141Q9NUB4 165 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 SNTNA6NMZ2 147 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 SOCS6O14544 535 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 GALR3O60755 368 aaPredicted RBP18.65■□□□□ 0.58
VPS53-201ENST00000291074 RDH16O75452 317 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 STX11O75558 287 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 GPR75O95800 540 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 MSL3P1P0C860 447 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 DESI1Q6ICB0 168 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 TAF8Q7Z7C8 310 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 ZFPM2Q8WW38 1151 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 C1GALT1C1Q96EU7 318 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 PRRG3Q9BZD7 231 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 ATP13A2Q9NQ11 1180 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 CYP8B1Q9UNU6 501 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 CLCA2Q9UQC9 943 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 CDH10Q9Y6N8 788 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 THBS1P07996 1170 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 ZGLP1P0C6A0 271 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 AZGP1P25311 298 aaKnown RBP18.65■□□□□ 0.58
VPS53-201ENST00000291074 BNC1Q01954 994 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 MGAT2Q10469 447 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 HNRNPA0Q13151 305 aaKnown RBP18.65■□□□□ 0.58
VPS53-201ENST00000291074 EIPR1Q53HC9 387 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 ABI3BPQ7Z7G0 1075 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 ENKD1Q9H0I2 346 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 HINT3Q9NQE9 182 aaKnown RBP18.65■□□□□ 0.58
VPS53-201ENST00000291074 MMP17Q9ULZ9 603 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 SF3B6Q9Y3B4 125 aaKnown RBP18.65■□□□□ 0.58
VPS53-201ENST00000291074 SPACA6W5XKT8 324 aa18.65■□□□□ 0.58
VPS53-201ENST00000291074 RPS4Y1P22090 263 aaKnown RBP18.64■□□□□ 0.57
VPS53-201ENST00000291074 GABRA3P34903 492 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 SLC1A3P43003 542 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 PLAURQ03405 335 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 ZNF791Q3KP31 576 aaPredicted RBP18.64■□□□□ 0.57
VPS53-201ENST00000291074 EXOSC6Q5RKV6 272 aaKnown RBP18.64■□□□□ 0.57
VPS53-201ENST00000291074 Q6ZS52 159 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 GDPD3Q7L5L3 318 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 RANBP3LQ86VV4 465 aaPredicted RBP18.64■□□□□ 0.57
VPS53-201ENST00000291074 PAIP2BQ9ULR5 123 aaKnown RBP18.64■□□□□ 0.57
VPS53-201ENST00000291074 EXOSC1Q9Y3B2 195 aaKnown RBP18.64■□□□□ 0.57
VPS53-201ENST00000291074 V9GYH0 126 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 SYNDIG1LA6NDD5 238 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 SHISA7A6NL88 538 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 PLOD3O60568 738 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 NID1P14543 1247 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 ST6GAL1P15907 406 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 MAKP20794 623 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 SDC2P34741 201 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 RABIFP47224 123 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 FXYD6P3P58550 94 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 OR1Q1Q15612 314 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 CRTC2Q53ET0 693 aaPredicted RBP18.64■□□□□ 0.57
VPS53-201ENST00000291074 SPATC1Q76KD6 591 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 OR8H2Q8N162 312 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 CDRT4Q8N9R6 151 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 OR2T33Q8NG76 320 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 OR9A4Q8NGU2 314 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 MSLNLQ96KJ4 702 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 CCDC3Q9BQI4 270 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 GSDMCQ9BYG8 508 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 NLGN3Q9NZ94 848 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 ENTPD2Q9Y5L3 495 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 HS3ST3A1Q9Y663 406 aa18.64■□□□□ 0.57
VPS53-201ENST00000291074 ZC3H12DA2A288 527 aaKnown RBP18.63■□□□□ 0.57
VPS53-201ENST00000291074 TRAPPC13A5PLN9 417 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 PTTG1O95997 202 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 DBIP07108 87 aaKnown RBP18.63■□□□□ 0.57
VPS53-201ENST00000291074 PSPHP78330 225 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 PLK5Q496M5 336 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 CPOQ8IVL8 374 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 ZNF485Q8NCK3 441 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 UFD1Q92890 307 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 SLC35B4Q969S0 331 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 SLC25A46Q96AG3 418 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 ANKRD9Q96BM1 317 aaPredicted RBP18.63■□□□□ 0.57
VPS53-201ENST00000291074 DCLRE1CQ96SD1 692 aaKnown RBP18.63■□□□□ 0.57
VPS53-201ENST00000291074 ARHGAP9Q9BRR9 750 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 UBQLN3Q9H347 655 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 MED20Q9H944 212 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 MUTYHQ9UIF7 546 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 CBLCQ9ULV8 474 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms