RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FAM74A3Q4VXF1 159 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 SLC6A19Q695T7 634 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 HBMQ6B0K9 141 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 HIST2H2AA3Q6FI13 130 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 TMEM88Q6PEY1 159 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 CD200R1LQ6Q8B3 271 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 CAMKMTQ7Z624 323 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 MEIOBQ8N635 442 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 ZNF433Q8N7K0 673 aaPredicted RBP13.44□□□□□ -0.26
SDC1-201ENST00000254351 GINS4Q9BRT9 223 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 KLK11Q9UBX7 282 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 SLC13A4Q9UKG4 626 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 DOCK6Q96HP0 2047 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 G3V3Q6 166 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 H0YC42 278 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 PSMD9O00233 223 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 FMO6PO60774 539 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 SEMA4GQ9NTN9 838 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 FBXL4Q9UKA2 621 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 OR51B4Q9Y5P0 310 aa13.44□□□□□ -0.26
SDC1-201ENST00000254351 ANKRD61A6NGH8 418 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 DUSP11O75319 330 aaKnown RBP13.43□□□□□ -0.26
SDC1-201ENST00000254351 EPPINO95925 133 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 GNRH1P01148 92 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 CKMP06732 381 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 PYCR1P32322 319 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 ZNF33BQ06732 778 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 HTR4Q13639 388 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 WASH6PQ9NQA3 447 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 RPS6KB2Q9UBS0 482 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.43□□□□□ -0.26
SDC1-201ENST00000254351 ARRDC5A6NEK1 342 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 OR5F1O95221 314 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 DRD2P14416 443 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 PSMB5P28074 263 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 OR12D2P58182 307 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 PLEKHS1Q5SXH7 462 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 DCAF4L2Q8NA75 395 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 MORN4Q8NDC4 146 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 OR51Q1Q8NH59 317 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 OR5W2Q8NH69 310 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 TMEM255BQ8WV15 326 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 AUTS2Q8WXX7 1259 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 ALG14Q96F25 216 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 ZNF416Q9BWM5 594 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 ZNF768Q9H5H4 540 aaKnown RBP13.43□□□□□ -0.26
SDC1-201ENST00000254351 FGF20Q9NP95 211 aaPredicted RBP13.43□□□□□ -0.26
SDC1-201ENST00000254351 NDOR1Q9UHB4 597 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 PFDN2Q9UHV9 154 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 POMT2Q9UKY4 750 aa13.43□□□□□ -0.26
SDC1-201ENST00000254351 SULT1A3P0DMM9 295 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 SULT1A4P0DMN0 295 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 NPR2P20594 1047 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 ZP3P21754 424 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 TRHRP34981 398 aaPredicted RBP13.42□□□□□ -0.26
SDC1-201ENST00000254351 GDNFP39905 211 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 DUSP6Q16828 381 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 HES5Q5TA89 166 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 ELP2Q6IA86 826 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 LINC01599Q8WXQ3 324 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 SMPDL3AQ92484 453 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 DERL3Q96Q80 235 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 REG4Q9BYZ8 158 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 ENKD1Q9H0I2 346 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 TMEM168Q9H0V1 697 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 C11orf49Q9H6J7 331 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 WDR26Q9H7D7 661 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 PCDHB16Q9NRJ7 776 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 FKBP7Q9Y680 259 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 MYO7AQ13402 2215 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 ANTXRLA6NF34 631 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 PLPP1O14494 284 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 UGDHO60701 494 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 CHRM4P08173 479 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 MPC1LP0DKB6 136 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 C1GALT1C1LP0DN25 315 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 THBS2P35442 1172 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 GCGRP47871 477 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 PSMA6P60900 246 aaKnown RBP13.42□□□□□ -0.26
SDC1-201ENST00000254351 SLC24A5Q71RS6 500 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 LINC00518Q8N0U6 118 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 TBC1D19Q8N5T2 526 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 ZNF454Q8N9F8 522 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 ZNF485Q8NCK3 441 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 TTLQ8NG68 377 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 BCL7CQ8WUZ0 217 aaPredicted RBP13.42□□□□□ -0.26
SDC1-201ENST00000254351 OR1F2PQ96R84 312 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 SARGQ9BW04 601 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 BTBD1Q9H0C5 482 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 LYARQ9NX58 379 aaKnown RBP13.42□□□□□ -0.26
SDC1-201ENST00000254351 NTMQ9P121 344 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 A0A1W2PRQ8 180 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 MFSD2BA6NFX1 497 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 OR6C75A6NL08 312 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 FKTNO75072 461 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 IGF2P01344 180 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 NMBP08949 121 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 ATXN8OSP0DMR3 200 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 ATF1P18846 271 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 MMP12P39900 470 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms