RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 MS4A8Q9BY19 250 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 ENKD1Q9H0I2 346 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 DPAGT1Q9H3H5 408 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 NLGN3Q9NZ94 848 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 CACNG2Q9Y698 323 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 ZNF780BQ9Y6R6 833 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 HIDE1A8MVS5 230 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 KHDRBS3O75525 346 aaKnown RBP11.19□□□□□ -0.62
USHBP1-201ENST00000252597 RFPL3O75679 317 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 FGF18O76093 207 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 GNRH1P01148 92 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 BSGP35613 385 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 SOX2P48431 317 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 PDX1P52945 283 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 SNTB2Q13425 540 aaKnown RBP11.19□□□□□ -0.62
USHBP1-201ENST00000252597 PDE7AQ13946 482 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 RNF44Q7L0R7 432 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 SIAH3Q8IW03 269 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 DCUN1D3Q8IWE4 304 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 OR4E2Q8NGC2 313 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 PFN4Q8NHR9 129 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 GNPDA2Q8TDQ7 276 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 CDS1Q92903 461 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 DTD2Q96FN9 168 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 OR51J1Q9H342 316 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 METTL17Q9H7H0 456 aaPredicted RBP11.19□□□□□ -0.62
USHBP1-201ENST00000252597 MAN2C1Q9NTJ4 1040 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 ZSCAN32Q9NX65 697 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 GLTPQ9NZD2 209 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 WDR45Q9Y484 360 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 CDC42EP2O14613 210 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 OR7A10O76100 309 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 RLN1P04808 185 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 ANXA3P12429 323 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 LAMP2P13473 410 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 MMP12P39900 470 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 ARHGDIBP52566 201 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 MINDY4Q4G0A6 757 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 C19orf48Q6RUI8 117 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 COQ8AQ8NI60 647 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 NXPE3Q969Y0 559 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 SLC41A3Q96GZ6 507 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 MS4A3Q96HJ5 214 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 WDFY2Q96P53 400 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 OR7D2Q96RA2 312 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 FUZQ9BT04 418 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 KCNN2Q9H2S1 579 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 AUNIPQ9H7T9 357 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 A4GALTQ9NPC4 353 aa11.19□□□□□ -0.62
USHBP1-201ENST00000252597 ABHD14A-ACY1A0A1B0GW23 586 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 A0A1W2PRQ8 180 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 MEIS3P1A6NDR6 274 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 SLC31A1O15431 190 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 RGS11O94810 467 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 RASGRP1O95267 797 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 TP53P04637 393 aaPredicted RBP11.18□□□□□ -0.62
USHBP1-201ENST00000252597 CSNK2A2P19784 350 aaPredicted RBP11.18□□□□□ -0.62
USHBP1-201ENST00000252597 GSTM3P21266 225 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 ENPP1P22413 925 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 RPL4P36578 427 aaKnown RBP11.18□□□□□ -0.62
USHBP1-201ENST00000252597 PITPNBP48739 271 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 UBE2MP61081 183 aaKnown RBP11.18□□□□□ -0.62
USHBP1-201ENST00000252597 DEFB134Q4QY38 66 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 ZNF613Q6PF04 617 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 ZNF793Q6ZN11 406 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 SPRED2Q7Z698 418 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 C12orf40Q86WS4 652 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 ZNF680Q8NEM1 530 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 OR11H4Q8NGC9 324 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 OR13C2Q8NGS9 318 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 OR5W2Q8NH69 310 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 GIMAP1Q8WWP7 306 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 CNRIP1Q96F85 164 aaPredicted RBP11.18□□□□□ -0.62
USHBP1-201ENST00000252597 PPP1R3EQ9H7J1 279 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 WBP1LQ9NX94 342 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 STOML2Q9UJZ1 356 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 KCND3Q9UK17 655 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 PRKNO60260 465 aaPredicted RBP11.18□□□□□ -0.62
USHBP1-201ENST00000252597 DPM1O60762 260 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 PDGFAP04085 211 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 NDUFV2P19404 249 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 PRR5P85299 388 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 STX4Q12846 297 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 TPBGQ13641 420 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 ARHGAP15Q53QZ3 475 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 LAMTOR1Q6IAA8 161 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 C11orf88Q6PI97 169 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 NR2C2APQ86WQ0 139 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 SLC39A11Q8N1S5 342 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 ACOT4Q8N9L9 421 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 C17orf47Q8NEP4 570 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 OR4K13Q8NH42 304 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 ARRDC3Q96B67 414 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 SGPP1Q9BX95 441 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 FN3KQ9H479 309 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 MRPS23Q9Y3D9 190 aaKnown RBP11.18□□□□□ -0.62
USHBP1-201ENST00000252597 SCN5AQ14524 2016 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 PLXNA4Q9HCM2 1894 aa11.18□□□□□ -0.62
USHBP1-201ENST00000252597 SCN8AQ9UQD0 1980 aa11.17□□□□□ -0.62
USHBP1-201ENST00000252597 CENPVL1A0A0U1RR11 272 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms