RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	IBTK	Q9P2D0	1353 aa	Predicted RBP	12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	UBN2	Q6ZU65	1347 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	RPS6KA4	O75676	772 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	PHF14	O94880	888 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	APBA3	O96018	575 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	FOXO4	P98177	505 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	ZNF34	Q8IZ26	560 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	LRRCC1	Q9C099	1032 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	IL1RAPL2	Q9NP60	686 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	CHMP3	Q9Y3E7	222 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	SIL1	Q9H173	461 aa		12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	TRMT112	Q9UI30	125 aa	Known RBP	12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	RTCB	Q9Y3I0	505 aa	Known RBP	12.97	□□□□□ -0.33
NECAP1-223	ENST00000640091	AFDN	P55196	1824 aa	Known RBP	12.96	□□□□□ -0.33
NECAP1-223	ENST00000640091	CCDC85A	Q96PX6	553 aa	Predicted RBP	12.96	□□□□□ -0.33
NECAP1-223	ENST00000640091	SRP68	Q9UHB9	627 aa	Known RBP	12.96	□□□□□ -0.33
NECAP1-223	ENST00000640091	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.96	□□□□□ -0.33
NECAP1-223	ENST00000640091	PCCA	P05165	728 aa	Predicted RBP	12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	OS9	Q13438	667 aa	Predicted RBP	12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	TXNRD1	Q16881	649 aa		12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	RABL6	Q3YEC7	729 aa	Predicted RBP	12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	SUSD4	Q5VX71	490 aa		12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	PLEKHM2	Q8IWE5	1019 aa		12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	ARHGEF1	Q92888	912 aa	Known RBP	12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	COL5A3	P25940	1745 aa	Predicted RBP	12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	USPL1	Q5W0Q7	1092 aa		12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	BICDL1	Q6ZP65	573 aa		12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	RHPN1	Q8TCX5	695 aa		12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	AK7	Q96M32	723 aa		12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	BACH2	Q9BYV9	841 aa		12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	NOP58	Q9Y2X3	529 aa	Known RBP	12.95	□□□□□ -0.34
NECAP1-223	ENST00000640091	SLC27A3	Q5K4L6	730 aa		12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	CIC	Q96RK0	1608 aa	Predicted RBP	12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	ZNF831	Q5JPB2	1677 aa		12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	RAB11FIP3	O75154	756 aa		12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	ZPR1	O75312	459 aa		12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	RFX5	P48382	616 aa	Predicted RBP	12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	FAM161A	Q3B820	660 aa		12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	C8orf34	Q49A92	452 aa		12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	TRAPPC3L	Q5T215	181 aa		12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	BCL2L12	Q9HB09	334 aa		12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	RBM19	Q9Y4C8	960 aa	Known RBP	12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	12.94	□□□□□ -0.34
NECAP1-223	ENST00000640091	IRS4	O14654	1257 aa	Predicted RBP	12.93	□□□□□ -0.34
NECAP1-223	ENST00000640091	PTPN12	Q05209	780 aa	Known RBP	12.93	□□□□□ -0.34
NECAP1-223	ENST00000640091	G3BP1	Q13283	466 aa	Known RBP eCLIP	12.93	□□□□□ -0.34
NECAP1-223	ENST00000640091	CLEC4G	Q6UXB4	293 aa		12.93	□□□□□ -0.34
NECAP1-223	ENST00000640091	KIF1BP	Q96EK5	621 aa		12.93	□□□□□ -0.34
NECAP1-223	ENST00000640091	NARF	Q9UHQ1	456 aa		12.93	□□□□□ -0.34
NECAP1-223	ENST00000640091	ZNF652	Q9Y2D9	606 aa		12.93	□□□□□ -0.34
NECAP1-223	ENST00000640091	RREB1	Q92766	1687 aa		12.93	□□□□□ -0.34
NECAP1-223	ENST00000640091	LY75	O60449	1722 aa		12.93	□□□□□ -0.34
NECAP1-223	ENST00000640091	RFC4	P35249	363 aa		12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	HSP90AB4P	Q58FF6	505 aa		12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	TSHZ3	Q63HK5	1081 aa		12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	TBC1D9B	Q66K14	1250 aa		12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	NUTM1	Q86Y26	1132 aa		12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	ZNF594	Q96JF6	807 aa	Predicted RBP	12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	NUP98	P52948	1817 aa		12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	PLSCR1	O15162	318 aa		12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	SASH1	O94885	1247 aa		12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	HCLS1	P14317	486 aa	Predicted RBP	12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	UTP14A	Q9BVJ6	771 aa	Known RBP	12.92	□□□□□ -0.34
NECAP1-223	ENST00000640091	COPRS	Q9NQ92	184 aa		12.91	□□□□□ -0.34
NECAP1-223	ENST00000640091	PARP10	Q53GL7	1025 aa		12.91	□□□□□ -0.34
NECAP1-223	ENST00000640091	CDHR2	Q9BYE9	1310 aa		12.9	□□□□□ -0.34
NECAP1-223	ENST00000640091	CSF1R	P07333	972 aa		12.9	□□□□□ -0.34
NECAP1-223	ENST00000640091	PDE1A	P54750	535 aa		12.9	□□□□□ -0.34
NECAP1-223	ENST00000640091	TTLL11	Q8NHH1	800 aa		12.9	□□□□□ -0.34
NECAP1-223	ENST00000640091	PLA2G12B	Q9BX93	195 aa		12.9	□□□□□ -0.34
NECAP1-223	ENST00000640091	SH3TC1	Q8TE82	1336 aa		12.9	□□□□□ -0.34
NECAP1-223	ENST00000640091	C4B	P0C0L5	1744 aa		12.9	□□□□□ -0.34
NECAP1-223	ENST00000640091	NTSR2	O95665	410 aa		12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	GSPT1	P15170	499 aa	Known RBP	12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	CCDC57	Q2TAC2	916 aa		12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	GREM2	Q9H772	168 aa		12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	PDE8A	O60658	829 aa		12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	SEC24B	O95487	1268 aa		12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	MX1	P20591	662 aa		12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	ERC1	Q8IUD2	1116 aa		12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	CLASRP	Q8N2M8	674 aa	Known RBP	12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	SETDB2	Q96T68	719 aa		12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	USP42	Q9H9J4	1324 aa	Known RBP	12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	TAF1L	Q8IZX4	1826 aa		12.89	□□□□□ -0.35
NECAP1-223	ENST00000640091	CTSW	P56202	376 aa		12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	TFCP2	Q12800	502 aa		12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	LRRC24	Q50LG9	513 aa		12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	BMP2KL	Q5H9B9	411 aa		12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	CCDC24	Q8N4L8	307 aa		12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	PUS3	Q9BZE2	481 aa	Known RBP	12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	TFCP2L1	Q9NZI6	479 aa		12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	SALL3	Q9BXA9	1300 aa		12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	ITGA6	P23229	1130 aa		12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	GTF2E1	P29083	439 aa	Predicted RBP	12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	EN1	Q05925	392 aa	Predicted RBP	12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	IFIT5	Q13325	482 aa	Known RBP	12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	ZNF827	Q17R98	1081 aa		12.88	□□□□□ -0.35
NECAP1-223	ENST00000640091	ERFE	Q4G0M1	354 aa		12.88	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms