RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 EP400Q96L91 3159 aa22.88■■□□□ 1.25
CLN3-254ENST00000637050 PLSCR1O15162 318 aa22.87■■□□□ 1.25
CLN3-254ENST00000637050 RTCBQ9Y3I0 505 aaKnown RBP22.87■■□□□ 1.25
CLN3-254ENST00000637050 FOXO4P98177 505 aa22.87■■□□□ 1.25
CLN3-254ENST00000637050 CLEC4GQ6UXB4 293 aa22.87■■□□□ 1.25
CLN3-254ENST00000637050 NOP58Q9Y2X3 529 aaKnown RBP22.87■■□□□ 1.25
CLN3-254ENST00000637050 SCN7AQ01118 1682 aa22.86■■□□□ 1.25
CLN3-254ENST00000637050 UBN2Q6ZU65 1347 aa22.86■■□□□ 1.25
CLN3-254ENST00000637050 ZNF652Q9Y2D9 606 aa22.86■■□□□ 1.25
CLN3-254ENST00000637050 CDHR2Q9BYE9 1310 aa22.85■■□□□ 1.25
CLN3-254ENST00000637050 SURF6O75683 361 aaKnown RBP22.85■■□□□ 1.25
CLN3-254ENST00000637050 HMGB2P26583 209 aaKnown RBP22.85■■□□□ 1.25
CLN3-254ENST00000637050 TXNRD1Q16881 649 aa22.85■■□□□ 1.25
CLN3-254ENST00000637050 PROM2Q8N271 834 aa22.85■■□□□ 1.25
CLN3-254ENST00000637050 ZBTB47Q9UFB7 747 aaPredicted RBP22.85■■□□□ 1.25
CLN3-254ENST00000637050 TNS1Q9HBL0 1735 aaKnown RBP22.85■■□□□ 1.25
CLN3-254ENST00000637050 RAB11FIP3O75154 756 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 RTL5Q5HYW3 569 aaPredicted RBP22.84■■□□□ 1.25
CLN3-254ENST00000637050 AK7Q96M32 723 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 PLA2G12BQ9BX93 195 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 NARFQ9UHQ1 456 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 APBB1O00213 710 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 APBA3O96018 575 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 HSP90AB4PQ58FF6 505 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 SMIM5Q71RC9 77 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 AMIGO3Q86WK7 504 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 FAM89AQ96GI7 184 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 LRRCC1Q9C099 1032 aa22.84■■□□□ 1.25
CLN3-254ENST00000637050 PARP10Q53GL7 1025 aa22.83■■□□□ 1.24
CLN3-254ENST00000637050 SMARCA5O60264 1052 aaPredicted RBP22.82■■□□□ 1.24
CLN3-254ENST00000637050 LMBR1LQ6UX01 489 aa22.82■■□□□ 1.24
CLN3-254ENST00000637050 ARHGEF1Q92888 912 aaKnown RBP22.82■■□□□ 1.24
CLN3-254ENST00000637050 TSHZ2Q9NRE2 1034 aa22.82■■□□□ 1.24
CLN3-254ENST00000637050 ADRA2BP18089 450 aa22.81■■□□□ 1.24
CLN3-254ENST00000637050 RFX5P48382 616 aaPredicted RBP22.81■■□□□ 1.24
CLN3-254ENST00000637050 BCL2L12Q9HB09 334 aa22.81■■□□□ 1.24
CLN3-254ENST00000637050 TRMT112Q9UI30 125 aaKnown RBP22.81■■□□□ 1.24
CLN3-254ENST00000637050 UBR3Q6ZT12 1888 aa22.81■■□□□ 1.24
CLN3-254ENST00000637050 SUSD4Q5VX71 490 aa22.81■■□□□ 1.24
CLN3-254ENST00000637050 PA2G4Q9UQ80 394 aaKnown RBP22.81■■□□□ 1.24
CLN3-254ENST00000637050 NIP7Q9Y221 180 aaKnown RBP eCLIP22.81■■□□□ 1.24
CLN3-254ENST00000637050 C4AP0C0L4 1744 aa22.8■■□□□ 1.24
CLN3-254ENST00000637050 RGPD3A6NKT7 1758 aaPredicted RBP22.8■■□□□ 1.24
CLN3-254ENST00000637050 RGPD4Q7Z3J3 1758 aa22.8■■□□□ 1.24
CLN3-254ENST00000637050 TRAPPC3LQ5T215 181 aa22.8■■□□□ 1.24
CLN3-254ENST00000637050 USPL1Q5W0Q7 1092 aa22.8■■□□□ 1.24
CLN3-254ENST00000637050 COPRSQ9NQ92 184 aa22.8■■□□□ 1.24
CLN3-254ENST00000637050 ZPR1O75312 459 aa22.79■■□□□ 1.24
CLN3-254ENST00000637050 C16orf71Q8IYS4 520 aaPredicted RBP22.79■■□□□ 1.24
CLN3-254ENST00000637050 SYNE4Q8N205 404 aa22.79■■□□□ 1.24
CLN3-254ENST00000637050 RHPN1Q8TCX5 695 aa22.79■■□□□ 1.24
CLN3-254ENST00000637050 KIF1BPQ96EK5 621 aa22.79■■□□□ 1.24
CLN3-254ENST00000637050 PLEKHM2Q8IWE5 1019 aa22.78■■□□□ 1.24
CLN3-254ENST00000637050 UTP14AQ9BVJ6 771 aaKnown RBP22.78■■□□□ 1.24
CLN3-254ENST00000637050 SRP68Q9UHB9 627 aaKnown RBP22.78■■□□□ 1.24
CLN3-254ENST00000637050 USP42Q9H9J4 1324 aaKnown RBP22.78■■□□□ 1.24
CLN3-254ENST00000637050 IRS4O14654 1257 aaPredicted RBP22.77■■□□□ 1.24
CLN3-254ENST00000637050 CSF1RP07333 972 aa22.77■■□□□ 1.24
CLN3-254ENST00000637050 PTPN12Q05209 780 aaKnown RBP22.77■■□□□ 1.24
CLN3-254ENST00000637050 NTSR2O95665 410 aa22.77■■□□□ 1.24
CLN3-254ENST00000637050 RFC4P35249 363 aa22.77■■□□□ 1.24
CLN3-254ENST00000637050 ERC1Q8IUD2 1116 aa22.77■■□□□ 1.24
CLN3-254ENST00000637050 SH3TC1Q8TE82 1336 aa22.77■■□□□ 1.23
CLN3-254ENST00000637050 PHF14O94880 888 aa22.76■■□□□ 1.23
CLN3-254ENST00000637050 SSFA2P28290 1259 aa22.76■■□□□ 1.23
CLN3-254ENST00000637050 OS9Q13438 667 aaPredicted RBP22.76■■□□□ 1.23
CLN3-254ENST00000637050 KLHDC4Q8TBB5 520 aa22.76■■□□□ 1.23
CLN3-254ENST00000637050 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.75■■□□□ 1.23
CLN3-254ENST00000637050 G3BP1Q13283 466 aaKnown RBP eCLIP22.75■■□□□ 1.23
CLN3-254ENST00000637050 FAM161AQ3B820 660 aa22.75■■□□□ 1.23
CLN3-254ENST00000637050 TBC1D9BQ66K14 1250 aa22.75■■□□□ 1.23
CLN3-254ENST00000637050 OTUD7AQ8TE49 926 aaPredicted RBP22.75■■□□□ 1.23
CLN3-254ENST00000637050 BACH2Q9BYV9 841 aa22.75■■□□□ 1.23
CLN3-254ENST00000637050 SALL3Q9BXA9 1300 aa22.75■■□□□ 1.23
CLN3-254ENST00000637050 PDE8AO60658 829 aa22.74■■□□□ 1.23
CLN3-254ENST00000637050 CHMP3Q9Y3E7 222 aa22.74■■□□□ 1.23
CLN3-254ENST00000637050 CTSWP56202 376 aa22.74■■□□□ 1.23
CLN3-254ENST00000637050 C8orf34Q49A92 452 aa22.74■■□□□ 1.23
CLN3-254ENST00000637050 IL1RAPL2Q9NP60 686 aa22.74■■□□□ 1.23
CLN3-254ENST00000637050 COL24A1Q17RW2 1714 aa22.73■■□□□ 1.23
CLN3-254ENST00000637050 SASH1O94885 1247 aa22.73■■□□□ 1.23
CLN3-254ENST00000637050 TTLL11Q8NHH1 800 aa22.73■■□□□ 1.23
CLN3-254ENST00000637050 SIL1Q9H173 461 aa22.73■■□□□ 1.23
CLN3-254ENST00000637050 MYH3P11055 1940 aa22.73■■□□□ 1.23
CLN3-254ENST00000637050 FAM177BA6PVY3 158 aa22.72■■□□□ 1.23
CLN3-254ENST00000637050 BMP2KLQ5H9B9 411 aa22.72■■□□□ 1.23
CLN3-254ENST00000637050 AKT1S1Q96B36 256 aa22.72■■□□□ 1.23
CLN3-254ENST00000637050 BCL11AQ9H165 835 aa22.72■■□□□ 1.23
CLN3-254ENST00000637050 OSBPL3Q9H4L5 887 aa22.72■■□□□ 1.23
CLN3-254ENST00000637050 LAMB2P55268 1798 aa22.72■■□□□ 1.23
CLN3-254ENST00000637050 HSP90B1P14625 803 aaKnown RBP22.71■■□□□ 1.23
CLN3-254ENST00000637050 DDX60Q8IY21 1712 aaKnown RBP22.71■■□□□ 1.23
CLN3-254ENST00000637050 ZNF827Q17R98 1081 aa22.71■■□□□ 1.23
CLN3-254ENST00000637050 CCDC57Q2TAC2 916 aa22.71■■□□□ 1.23
CLN3-254ENST00000637050 BICDL1Q6ZP65 573 aa22.71■■□□□ 1.23
CLN3-254ENST00000637050 ILDR1Q86SU0 546 aaPredicted RBP22.71■■□□□ 1.23
CLN3-254ENST00000637050 SETDB2Q96T68 719 aa22.71■■□□□ 1.23
CLN3-254ENST00000637050 PDE1AP54750 535 aa22.7■■□□□ 1.22
CLN3-254ENST00000637050 STAP2Q9UGK3 403 aa22.7■■□□□ 1.22
CLN3-254ENST00000637050 HCLS1P14317 486 aaPredicted RBP22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms