RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 UTYO14607 1347 aa25.9■■□□□ 1.74
CLN3-245ENST00000636172 GNAI3P08754 354 aa25.89■■□□□ 1.74
CLN3-245ENST00000636172 NBPF7P0C2Y1 421 aaPredicted RBP25.89■■□□□ 1.74
CLN3-245ENST00000636172 GYS1P13807 737 aa25.89■■□□□ 1.74
CLN3-245ENST00000636172 TBC1D9BQ66K14 1250 aa25.89■■□□□ 1.74
CLN3-245ENST00000636172 C9orf78Q9NZ63 289 aaPredicted RBP25.89■■□□□ 1.74
CLN3-245ENST00000636172 NIP7Q9Y221 180 aaKnown RBP eCLIP25.89■■□□□ 1.74
CLN3-245ENST00000636172 COL24A1Q17RW2 1714 aa25.88■■□□□ 1.73
CLN3-245ENST00000636172 UBTFL1P0CB47 393 aaPredicted RBP25.88■■□□□ 1.73
CLN3-245ENST00000636172 C1orf115Q9H7X2 142 aa25.88■■□□□ 1.73
CLN3-245ENST00000636172 MSH5O43196 834 aa25.87■■□□□ 1.73
CLN3-245ENST00000636172 PARP10Q53GL7 1025 aa25.86■■□□□ 1.73
CLN3-245ENST00000636172 SRCAPQ6ZRS2 3230 aa25.85■■□□□ 1.73
CLN3-245ENST00000636172 H7C1W4 665 aa25.85■■□□□ 1.73
CLN3-245ENST00000636172 CASP7P55210 303 aa25.85■■□□□ 1.73
CLN3-245ENST00000636172 SUSD4Q5VX71 490 aa25.85■■□□□ 1.73
CLN3-245ENST00000636172 BICDL1Q6ZP65 573 aa25.85■■□□□ 1.73
CLN3-245ENST00000636172 UBE3BQ7Z3V4 1068 aa25.85■■□□□ 1.73
CLN3-245ENST00000636172 JARID2Q92833 1246 aaPredicted RBP25.85■■□□□ 1.73
CLN3-245ENST00000636172 GNAI2P04899 355 aa25.84■■□□□ 1.73
CLN3-245ENST00000636172 PCDHB15Q9Y5E8 787 aa25.84■■□□□ 1.73
CLN3-245ENST00000636172 PCCAP05165 728 aaPredicted RBP25.83■■□□□ 1.73
CLN3-245ENST00000636172 ZBTB38Q8NAP3 1195 aaPredicted RBP25.83■■□□□ 1.73
CLN3-245ENST00000636172 SETDB2Q96T68 719 aa25.83■■□□□ 1.73
CLN3-245ENST00000636172 LRRFIP2Q9Y608 721 aaKnown RBP25.83■■□□□ 1.73
CLN3-245ENST00000636172 NFIXQ14938 502 aa25.83■■□□□ 1.72
CLN3-245ENST00000636172 RTL5Q5HYW3 569 aaPredicted RBP25.82■■□□□ 1.72
CLN3-245ENST00000636172 SUCLG2Q96I99 432 aa25.82■■□□□ 1.72
CLN3-245ENST00000636172 UTP14AQ9BVJ6 771 aaKnown RBP25.82■■□□□ 1.72
CLN3-245ENST00000636172 PPP4R2Q9NY27 417 aa25.82■■□□□ 1.72
CLN3-245ENST00000636172 TRMT112Q9UI30 125 aaKnown RBP25.82■■□□□ 1.72
CLN3-245ENST00000636172 FAM177BA6PVY3 158 aa25.81■■□□□ 1.72
CLN3-245ENST00000636172 NTSR2O95665 410 aa25.81■■□□□ 1.72
CLN3-245ENST00000636172 PPP1R42Q7Z4L9 355 aa25.81■■□□□ 1.72
CLN3-245ENST00000636172 FAM89AQ96GI7 184 aa25.81■■□□□ 1.72
CLN3-245ENST00000636172 KAZALD1Q96I82 304 aa25.81■■□□□ 1.72
CLN3-245ENST00000636172 SYNE4Q8N205 404 aa25.8■■□□□ 1.72
CLN3-245ENST00000636172 PDGFDQ9GZP0 370 aaPredicted RBP25.8■■□□□ 1.72
CLN3-245ENST00000636172 CARMIL3Q8ND23 1372 aa25.8■■□□□ 1.72
CLN3-245ENST00000636172 TM4SF1P30408 202 aa25.79■■□□□ 1.72
CLN3-245ENST00000636172 NLGN1Q8N2Q7 840 aa25.79■■□□□ 1.72
CLN3-245ENST00000636172 CDHR2Q9BYE9 1310 aa25.78■■□□□ 1.72
CLN3-245ENST00000636172 HDAC5Q9UQL6 1122 aa25.78■■□□□ 1.72
CLN3-245ENST00000636172 SH3TC1Q8TE82 1336 aa25.78■■□□□ 1.72
CLN3-245ENST00000636172 CEP85Q6P2H3 762 aa25.78■■□□□ 1.72
CLN3-245ENST00000636172 LAMB2P55268 1798 aa25.77■■□□□ 1.72
CLN3-245ENST00000636172 EPHA10Q5JZY3 1008 aa25.77■■□□□ 1.72
CLN3-245ENST00000636172 BICC1Q9H694 974 aaKnown RBP25.77■■□□□ 1.72
CLN3-245ENST00000636172 CASZ1Q86V15 1759 aa25.76■■□□□ 1.71
CLN3-245ENST00000636172 DDX60Q8IY21 1712 aaKnown RBP25.76■■□□□ 1.71
CLN3-245ENST00000636172 DDR1Q08345 913 aa25.76■■□□□ 1.71
CLN3-245ENST00000636172 MSL1Q68DK7 614 aa25.76■■□□□ 1.71
CLN3-245ENST00000636172 NBPF5PQ86XG9 351 aaPredicted RBP25.76■■□□□ 1.71
CLN3-245ENST00000636172 NUTM1Q86Y26 1132 aa25.76■■□□□ 1.71
CLN3-245ENST00000636172 SIRT2Q8IXJ6 389 aa25.76■■□□□ 1.71
CLN3-245ENST00000636172 ANKRD44Q8N8A2 993 aa25.76■■□□□ 1.71
CLN3-245ENST00000636172 NYXQ9GZU5 481 aa25.75■■□□□ 1.71
CLN3-245ENST00000636172 POLRMTO00411 1230 aaKnown RBP25.74■■□□□ 1.71
CLN3-245ENST00000636172 IRS4O14654 1257 aaPredicted RBP25.74■■□□□ 1.71
CLN3-245ENST00000636172 FOXO4P98177 505 aa25.74■■□□□ 1.71
CLN3-245ENST00000636172 R3HDM1Q15032 1099 aaKnown RBP25.74■■□□□ 1.71
CLN3-245ENST00000636172 B4GALNT3Q6L9W6 998 aa25.74■■□□□ 1.71
CLN3-245ENST00000636172 RPAP2Q8IXW5 612 aaPredicted RBP25.74■■□□□ 1.71
CLN3-245ENST00000636172 CCDC136Q96JN2 1154 aa25.74■■□□□ 1.71
CLN3-245ENST00000636172 PLA2G12BQ9BX93 195 aa25.74■■□□□ 1.71
CLN3-245ENST00000636172 ERFEQ4G0M1 354 aa25.73■■□□□ 1.71
CLN3-245ENST00000636172 MYH3P11055 1940 aa25.73■■□□□ 1.71
CLN3-245ENST00000636172 RABL6Q3YEC7 729 aaPredicted RBP25.73■■□□□ 1.71
CLN3-245ENST00000636172 TPTE2Q6XPS3 522 aa25.73■■□□□ 1.71
CLN3-245ENST00000636172 ABCC12Q96J65 1359 aa25.72■■□□□ 1.71
CLN3-245ENST00000636172 NRXN2Q9P2S2 1712 aa25.72■■□□□ 1.71
CLN3-245ENST00000636172 ATP8B2P98198 1209 aa25.72■■□□□ 1.71
CLN3-245ENST00000636172 MTX1Q13505 466 aa25.72■■□□□ 1.71
CLN3-245ENST00000636172 SLC16A10Q8TF71 515 aa25.72■■□□□ 1.71
CLN3-245ENST00000636172 PNMA6EA0A0J9YXQ4 647 aa25.71■■□□□ 1.71
CLN3-245ENST00000636172 SERPINB2P05120 415 aa25.71■■□□□ 1.71
CLN3-245ENST00000636172 MMP10P09238 476 aa25.71■■□□□ 1.71
CLN3-245ENST00000636172 HCLS1P14317 486 aaPredicted RBP25.71■■□□□ 1.71
CLN3-245ENST00000636172 HDAC1Q13547 482 aaPredicted RBP25.71■■□□□ 1.71
CLN3-245ENST00000636172 IGHDP01880 384 aa25.7■■□□□ 1.7
CLN3-245ENST00000636172 GTF2E1P29083 439 aaPredicted RBP25.7■■□□□ 1.7
CLN3-245ENST00000636172 CNBD1Q8NA66 436 aa25.7■■□□□ 1.7
CLN3-245ENST00000636172 PDE8AO60658 829 aa25.69■■□□□ 1.7
CLN3-245ENST00000636172 SLC10A5Q5PT55 438 aa25.69■■□□□ 1.7
CLN3-245ENST00000636172 PRR5LQ6MZQ0 368 aa25.69■■□□□ 1.7
CLN3-245ENST00000636172 LMBR1LQ6UX01 489 aa25.68■■□□□ 1.7
CLN3-245ENST00000636172 SRGAP3O43295 1099 aa25.68■■□□□ 1.7
CLN3-245ENST00000636172 CTSWP56202 376 aa25.68■■□□□ 1.7
CLN3-245ENST00000636172 POLA2Q14181 598 aa25.68■■□□□ 1.7
CLN3-245ENST00000636172 CCDC24Q8N4L8 307 aa25.68■■□□□ 1.7
CLN3-245ENST00000636172 SSH3Q8TE77 659 aa25.68■■□□□ 1.7
CLN3-245ENST00000636172 RWDD1Q9H446 243 aaPredicted RBP25.68■■□□□ 1.7
CLN3-245ENST00000636172 TNRC6CQ9HCJ0 1690 aaKnown RBP25.67■■□□□ 1.7
CLN3-245ENST00000636172 PSDA5PKW4 1024 aaPredicted RBP25.67■■□□□ 1.7
CLN3-245ENST00000636172 NPHP1O15259 732 aa25.67■■□□□ 1.7
CLN3-245ENST00000636172 HSP90B1P14625 803 aaKnown RBP25.67■■□□□ 1.7
CLN3-245ENST00000636172 PARP3Q9Y6F1 533 aa25.67■■□□□ 1.7
CLN3-245ENST00000636172 HMMRO75330 724 aa25.66■■□□□ 1.7
CLN3-245ENST00000636172 CSF1RP07333 972 aa25.66■■□□□ 1.7
CLN3-245ENST00000636172 KDM2BQ8NHM5 1336 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms