RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	SRP68	Q9UHB9	627 aa	Known RBP	11.99	□□□□□ -0.49
PDLIM5-223	ENST00000627587	FKBP5	Q13451	457 aa	Predicted RBP	11.98	□□□□□ -0.49
PDLIM5-223	ENST00000627587	VSIG10	Q8N0Z9	540 aa		11.98	□□□□□ -0.49
PDLIM5-223	ENST00000627587	USP16	Q9Y5T5	823 aa		11.98	□□□□□ -0.49
PDLIM5-223	ENST00000627587	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.98	□□□□□ -0.49
PDLIM5-223	ENST00000627587	POLRMT	O00411	1230 aa	Known RBP	11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	DDR1	Q08345	913 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	SIRT2	Q8IXJ6	389 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	TTC5	Q8N0Z6	440 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	DNAJC5G	Q8N7S2	189 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	FMNL2	Q96PY5	1086 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	C1orf115	Q9H7X2	142 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	NMRK2	Q9NPI5	230 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	TSHZ2	Q9NRE2	1034 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	DBF4	Q9UBU7	674 aa	Predicted RBP	11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	NARF	Q9UHQ1	456 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	CYP19A1	P11511	503 aa	Predicted RBP	11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	HDAC1	Q13547	482 aa	Predicted RBP	11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	DNAJC10	Q8IXB1	793 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	MEIS3	Q99687	375 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	TJP1	Q07157	1748 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	ARFGEF2	Q9Y6D5	1785 aa		11.97	□□□□□ -0.49
PDLIM5-223	ENST00000627587	CEP350	Q5VT06	3117 aa		11.96	□□□□□ -0.49
PDLIM5-223	ENST00000627587	SNRPA1	P09661	255 aa	Known RBP	11.96	□□□□□ -0.49
PDLIM5-223	ENST00000627587	USPL1	Q5W0Q7	1092 aa		11.96	□□□□□ -0.49
PDLIM5-223	ENST00000627587	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.96	□□□□□ -0.49
PDLIM5-223	ENST00000627587	RNF181	Q9P0P0	153 aa		11.96	□□□□□ -0.49
PDLIM5-223	ENST00000627587	PDZRN3	Q9UPQ7	1066 aa		11.96	□□□□□ -0.49
PDLIM5-223	ENST00000627587		A0A087WZG4	1122 aa		11.95	□□□□□ -0.5
PDLIM5-223	ENST00000627587	SLC4A10	Q6U841	1118 aa		11.95	□□□□□ -0.5
PDLIM5-223	ENST00000627587	CHRNA5	P30532	468 aa		11.95	□□□□□ -0.5
PDLIM5-223	ENST00000627587	CCT4	P50991	539 aa	Known RBP	11.95	□□□□□ -0.5
PDLIM5-223	ENST00000627587	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.95	□□□□□ -0.5
PDLIM5-223	ENST00000627587	PI4KAP2	A4QPH2	592 aa		11.94	□□□□□ -0.5
PDLIM5-223	ENST00000627587	STARD3NL	O95772	234 aa		11.94	□□□□□ -0.5
PDLIM5-223	ENST00000627587	PIP4K2A	P48426	406 aa	Predicted RBP	11.94	□□□□□ -0.5
PDLIM5-223	ENST00000627587	PI4KAP1	Q8N8J0	262 aa		11.94	□□□□□ -0.5
PDLIM5-223	ENST00000627587	RRAGC	Q9HB90	399 aa		11.94	□□□□□ -0.5
PDLIM5-223	ENST00000627587	SERPINB2	P05120	415 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	LMNB1	P20700	586 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	NFIX	Q14938	502 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	SMC5	Q8IY18	1101 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	TTLL6	Q8N841	843 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	RWDD1	Q9H446	243 aa	Predicted RBP	11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	HYPK	Q9NX55	129 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	AFDN	P55196	1824 aa	Known RBP	11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	NBPF26	B4DH59	902 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587		H0YIN7	160 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	BEND3	Q5T5X7	828 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	NBPF10	Q6P3W6	841 aa	Known RBP	11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	NBPF15	Q8N660	670 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	SMC1B	Q8NDV3	1235 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	KLRG1	Q96E93	195 aa		11.93	□□□□□ -0.5
PDLIM5-223	ENST00000627587	COL15A1	P39059	1388 aa		11.92	□□□□□ -0.5
PDLIM5-223	ENST00000627587	SBF1	O95248	1867 aa		11.92	□□□□□ -0.5
PDLIM5-223	ENST00000627587	DNAAF4	Q8WXU2	420 aa		11.92	□□□□□ -0.5
PDLIM5-223	ENST00000627587	USP44	Q9H0E7	712 aa		11.92	□□□□□ -0.5
PDLIM5-223	ENST00000627587	GLTPD2	A6NH11	291 aa		11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	MYL6B	P14649	208 aa		11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	VEGFA	P15692	232 aa	Predicted RBP	11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	JMY	Q8N9B5	988 aa		11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	ZBTB1	Q9Y2K1	713 aa		11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	EIF5	P55010	431 aa	Known RBP	11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	CEP85	Q6P2H3	762 aa		11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	KSR2	Q6VAB6	950 aa		11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	C2CD5	Q86YS7	1000 aa		11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	WDR90	Q96KV7	1748 aa		11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	MAP3K2	Q9Y2U5	619 aa		11.91	□□□□□ -0.5
PDLIM5-223	ENST00000627587	NRXN2	Q9P2S2	1712 aa		11.9	□□□□□ -0.5
PDLIM5-223	ENST00000627587	A1BG	P04217	495 aa		11.9	□□□□□ -0.5
PDLIM5-223	ENST00000627587	PDE6B	P35913	854 aa		11.9	□□□□□ -0.5
PDLIM5-223	ENST00000627587	NPM2	Q86SE8	214 aa	Known RBP	11.9	□□□□□ -0.5
PDLIM5-223	ENST00000627587	ANKRD44	Q8N8A2	993 aa		11.9	□□□□□ -0.5
PDLIM5-223	ENST00000627587	XAGE3	Q8WTP9	111 aa		11.9	□□□□□ -0.5
PDLIM5-223	ENST00000627587	BCL2L12	Q9HB09	334 aa		11.9	□□□□□ -0.5
PDLIM5-223	ENST00000627587	ERBB4	Q15303	1308 aa		11.9	□□□□□ -0.51
PDLIM5-223	ENST00000627587	AIMP1	Q12904	312 aa	Known RBP	11.89	□□□□□ -0.51
PDLIM5-223	ENST00000627587	DPY19L2	Q6NUT2	758 aa		11.89	□□□□□ -0.51
PDLIM5-223	ENST00000627587	COPS6	Q7L5N1	327 aa		11.89	□□□□□ -0.51
PDLIM5-223	ENST00000627587	BRIP1	Q9BX63	1249 aa		11.89	□□□□□ -0.51
PDLIM5-223	ENST00000627587	SRCIN1	Q9C0H9	1055 aa		11.89	□□□□□ -0.51
PDLIM5-223	ENST00000627587	IGKV5-2	P06315	115 aa		11.88	□□□□□ -0.51
PDLIM5-223	ENST00000627587	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.88	□□□□□ -0.51
PDLIM5-223	ENST00000627587	PDE4A	P27815	886 aa		11.88	□□□□□ -0.51
PDLIM5-223	ENST00000627587	IL6ST	P40189	918 aa	Predicted RBP	11.88	□□□□□ -0.51
PDLIM5-223	ENST00000627587	CWF19L2	Q2TBE0	894 aa	Known RBP	11.88	□□□□□ -0.51
PDLIM5-223	ENST00000627587	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	DDX58	O95786	925 aa	Known RBP	11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	RGS3	P49796	1198 aa		11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	DLEC1	Q9Y238	1755 aa		11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	GNAI2	P04899	355 aa		11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	GNAI3	P08754	354 aa		11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	NUCB1	Q02818	461 aa		11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	RASSF7	Q02833	373 aa		11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	TTLL7	Q6ZT98	887 aa		11.87	□□□□□ -0.51
PDLIM5-223	ENST00000627587	PNMA6E	A0A0J9YXQ4	647 aa		11.86	□□□□□ -0.51
PDLIM5-223	ENST00000627587	SOGA3	Q5TF21	947 aa		11.86	□□□□□ -0.51
PDLIM5-223	ENST00000627587	BICDL1	Q6ZP65	573 aa		11.86	□□□□□ -0.51

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