RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 NTSR2O95665 410 aa16.31■□□□□ 0.2
PNKP-217ENST00000625216 PRELPP51888 382 aa16.31■□□□□ 0.2
PNKP-217ENST00000625216 TCIRG1Q13488 830 aa16.31■□□□□ 0.2
PNKP-217ENST00000625216 CCDC93Q567U6 631 aa16.31■□□□□ 0.2
PNKP-217ENST00000625216 SLC10A5Q5PT55 438 aa16.31■□□□□ 0.2
PNKP-217ENST00000625216 UTP14AQ9BVJ6 771 aaKnown RBP16.31■□□□□ 0.2
PNKP-217ENST00000625216 NMRK2Q9NPI5 230 aa16.31■□□□□ 0.2
PNKP-217ENST00000625216 CHPF2Q9P2E5 772 aa16.31■□□□□ 0.2
PNKP-217ENST00000625216 GLTPD2A6NH11 291 aa16.3■□□□□ 0.2
PNKP-217ENST00000625216 HOXA10P31260 410 aaPredicted RBP16.3■□□□□ 0.2
PNKP-217ENST00000625216 DPY19L2Q6NUT2 758 aa16.3■□□□□ 0.2
PNKP-217ENST00000625216 ANKRD13DQ6ZTN6 518 aa16.3■□□□□ 0.2
PNKP-217ENST00000625216 RTKN2Q8IZC4 609 aa16.3■□□□□ 0.2
PNKP-217ENST00000625216 PLBD2Q8NHP8 589 aa16.3■□□□□ 0.2
PNKP-217ENST00000625216 ABCC12Q96J65 1359 aa16.29■□□□□ 0.2
PNKP-217ENST00000625216 GRIPAP1Q4V328 841 aa16.29■□□□□ 0.2
PNKP-217ENST00000625216 CC2D2BQ6DHV5 1058 aa16.29■□□□□ 0.2
PNKP-217ENST00000625216 C16orf71Q8IYS4 520 aaPredicted RBP16.29■□□□□ 0.2
PNKP-217ENST00000625216 RPGRQ92834 1020 aaKnown RBP16.29■□□□□ 0.2
PNKP-217ENST00000625216 CDCA7LQ96GN5 454 aa16.29■□□□□ 0.2
PNKP-217ENST00000625216 NLRP3Q96P20 1036 aa16.29■□□□□ 0.2
PNKP-217ENST00000625216 NLRP10Q86W26 655 aa16.28■□□□□ 0.2
PNKP-217ENST00000625216 WWC1Q8IX03 1113 aa16.28■□□□□ 0.2
PNKP-217ENST00000625216 RBM17Q96I25 401 aaKnown RBP16.28■□□□□ 0.2
PNKP-217ENST00000625216 CRAMP1Q96RY5 1269 aa16.28■□□□□ 0.2
PNKP-217ENST00000625216 RRAGCQ9HB90 399 aa16.28■□□□□ 0.2
PNKP-217ENST00000625216 HSPA6P17066 643 aa16.27■□□□□ 0.2
PNKP-217ENST00000625216 FKBP4Q02790 459 aaKnown RBP eCLIP16.27■□□□□ 0.2
PNKP-217ENST00000625216 RBM46Q8TBY0 533 aaKnown RBP16.27■□□□□ 0.2
PNKP-217ENST00000625216 COL11A2P13942 1736 aaPredicted RBP16.27■□□□□ 0.19
PNKP-217ENST00000625216 IL16Q14005 1332 aa16.26■□□□□ 0.19
PNKP-217ENST00000625216 VEGFAP15692 232 aaPredicted RBP16.26■□□□□ 0.19
PNKP-217ENST00000625216 TRMT112Q9UI30 125 aaKnown RBP16.26■□□□□ 0.19
PNKP-217ENST00000625216 NUP98P52948 1817 aa16.26■□□□□ 0.19
PNKP-217ENST00000625216 ELL2O00472 640 aaPredicted RBP16.25■□□□□ 0.19
PNKP-217ENST00000625216 GOLGA2Q08379 1002 aa16.25■□□□□ 0.19
PNKP-217ENST00000625216 TRIM28Q13263 835 aaKnown RBP16.25■□□□□ 0.19
PNKP-217ENST00000625216 CCDC30Q5VVM6 783 aa16.25■□□□□ 0.19
PNKP-217ENST00000625216 C8orf58Q8NAV2 365 aa16.25■□□□□ 0.19
PNKP-217ENST00000625216 SPINK5Q9NQ38 1064 aaPredicted RBP16.25■□□□□ 0.19
PNKP-217ENST00000625216 SBF1O95248 1867 aa16.25■□□□□ 0.19
PNKP-217ENST00000625216 SLX4Q8IY92 1834 aa16.24■□□□□ 0.19
PNKP-217ENST00000625216 SH3TC1Q8TE82 1336 aa16.24■□□□□ 0.19
PNKP-217ENST00000625216 FSTL1Q12841 308 aa16.24■□□□□ 0.19
PNKP-217ENST00000625216 PSMD1Q99460 953 aa16.24■□□□□ 0.19
PNKP-217ENST00000625216 ISCA1Q9BUE6 129 aa16.24■□□□□ 0.19
PNKP-217ENST00000625216 TMX4Q9H1E5 349 aaPredicted RBP16.24■□□□□ 0.19
PNKP-217ENST00000625216 SLFN5Q08AF3 891 aa16.23■□□□□ 0.19
PNKP-217ENST00000625216 SYNE4Q8N205 404 aa16.23■□□□□ 0.19
PNKP-217ENST00000625216 BBOX1O75936 387 aa16.22■□□□□ 0.19
PNKP-217ENST00000625216 OLFM4Q6UX06 510 aa16.22■□□□□ 0.19
PNKP-217ENST00000625216 C3orf67Q6ZVT6 689 aa16.22■□□□□ 0.19
PNKP-217ENST00000625216 RIC3Q7Z5B4 369 aa16.22■□□□□ 0.19
PNKP-217ENST00000625216 WDR63Q8IWG1 891 aa16.22■□□□□ 0.19
PNKP-217ENST00000625216 FER1L6Q2WGJ9 1857 aa16.21■□□□□ 0.19
PNKP-217ENST00000625216 PPEF1O14829 653 aaPredicted RBP16.21■□□□□ 0.19
PNKP-217ENST00000625216 DDX58O95786 925 aaKnown RBP16.21■□□□□ 0.19
PNKP-217ENST00000625216 HCLS1P14317 486 aaPredicted RBP16.21■□□□□ 0.19
PNKP-217ENST00000625216 TRMT2AQ8IZ69 625 aaKnown RBP16.21■□□□□ 0.19
PNKP-217ENST00000625216 PHAXQ9H814 394 aaKnown RBP16.21■□□□□ 0.19
PNKP-217ENST00000625216 ZNF277Q9NRM2 450 aaPredicted RBP16.21■□□□□ 0.19
PNKP-217ENST00000625216 ATP5J2-PTCD1G3V325 749 aa16.2■□□□□ 0.18
PNKP-217ENST00000625216 HSP90B1P14625 803 aaKnown RBP16.2■□□□□ 0.18
PNKP-217ENST00000625216 IARSP41252 1262 aaKnown RBP16.2■□□□□ 0.18
PNKP-217ENST00000625216 APLP1P51693 650 aa16.2■□□□□ 0.18
PNKP-217ENST00000625216 DDX46Q7L014 1031 aaKnown RBP16.2■□□□□ 0.18
PNKP-217ENST00000625216 TSPYL6Q8N831 410 aa16.2■□□□□ 0.18
PNKP-217ENST00000625216 SMC1BQ8NDV3 1235 aa16.2■□□□□ 0.18
PNKP-217ENST00000625216 TSR2Q969E8 191 aaKnown RBP16.2■□□□□ 0.18
PNKP-217ENST00000625216 ATP6V0A2Q9Y487 856 aa16.2■□□□□ 0.18
PNKP-217ENST00000625216 ARFGEF2Q9Y6D5 1785 aa16.2■□□□□ 0.18
PNKP-217ENST00000625216 E9PSI1 815 aa16.19■□□□□ 0.18
PNKP-217ENST00000625216 JDP2Q8WYK2 163 aa16.19■□□□□ 0.18
PNKP-217ENST00000625216 STK31Q9BXU1 1019 aa16.19■□□□□ 0.18
PNKP-217ENST00000625216 VPS33BQ9H267 617 aa16.19■□□□□ 0.18
PNKP-217ENST00000625216 POTECB2RU33 542 aa16.18■□□□□ 0.18
PNKP-217ENST00000625216 DDNO94850 711 aaPredicted RBP16.18■□□□□ 0.18
PNKP-217ENST00000625216 SF3B3Q15393 1217 aaKnown RBP16.18■□□□□ 0.18
PNKP-217ENST00000625216 TWISTNBQ3B726 338 aaPredicted RBP16.18■□□□□ 0.18
PNKP-217ENST00000625216 TMC4Q7Z404 712 aa16.18■□□□□ 0.18
PNKP-217ENST00000625216 SP8Q8IXZ3 490 aa16.18■□□□□ 0.18
PNKP-217ENST00000625216 CCDC191Q8NCU4 936 aa16.18■□□□□ 0.18
PNKP-217ENST00000625216 FAM89AQ96GI7 184 aa16.18■□□□□ 0.18
PNKP-217ENST00000625216 CEP350Q5VT06 3117 aa16.18■□□□□ 0.18
PNKP-217ENST00000625216 SNED1Q8TER0 1413 aa16.18■□□□□ 0.18
PNKP-217ENST00000625216 ABCC4O15439 1325 aa16.18■□□□□ 0.18
PNKP-217ENST00000625216 TNRC6CQ9HCJ0 1690 aaKnown RBP16.18■□□□□ 0.18
PNKP-217ENST00000625216 IQCA1LA6NCM1 817 aa16.17■□□□□ 0.18
PNKP-217ENST00000625216 FZD9O00144 591 aa16.17■□□□□ 0.18
PNKP-217ENST00000625216 GRAPQ13588 217 aa16.17■□□□□ 0.18
PNKP-217ENST00000625216 ZBTB38Q8NAP3 1195 aaPredicted RBP16.17■□□□□ 0.18
PNKP-217ENST00000625216 GRAPLQ8TC17 118 aaPredicted RBP16.17■□□□□ 0.18
PNKP-217ENST00000625216 L3MBTL3Q96JM7 780 aaPredicted RBP16.17■□□□□ 0.18
PNKP-217ENST00000625216 METTL22Q9BUU2 404 aaPredicted RBP16.17■□□□□ 0.18
PNKP-217ENST00000625216 TCERG1O14776 1098 aaKnown RBP16.16■□□□□ 0.18
PNKP-217ENST00000625216 KSR2Q6VAB6 950 aa16.16■□□□□ 0.18
PNKP-217ENST00000625216 SUPT20HQ8NEM7 779 aa16.16■□□□□ 0.18
PNKP-217ENST00000625216 MYD88Q99836 296 aa16.16■□□□□ 0.18
PNKP-217ENST00000625216 IRS4O14654 1257 aaPredicted RBP16.15■□□□□ 0.18
PNKP-217ENST00000625216 RTFDC1Q9BY42 306 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms