RNA–Protein interactions for RNA: ENST00000618944.4

TP53-223, Transcript of tumor protein p53, human

TSL 1 (best) BASIC

Gene TP53, Length 2,404 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TP53-223	ENST00000618944	SNRPA1	P09661	255 aa	Known RBP	13.47	□□□□□ -0.25
TP53-223	ENST00000618944	SYT1	P21579	422 aa		13.47	□□□□□ -0.25
TP53-223	ENST00000618944	FSD1	Q9BTV5	496 aa		13.47	□□□□□ -0.25
TP53-223	ENST00000618944	CCDC9	Q9Y3X0	531 aa	Known RBP	13.47	□□□□□ -0.25
TP53-223	ENST00000618944	RBM8A	Q9Y5S9	174 aa	Known RBP	13.47	□□□□□ -0.25
TP53-223	ENST00000618944	NDUFB9	Q9Y6M9	179 aa		13.47	□□□□□ -0.25
TP53-223	ENST00000618944	OVOS2	A0A0G2JMS6	1433 aa		13.46	□□□□□ -0.25
TP53-223	ENST00000618944	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.46	□□□□□ -0.25
TP53-223	ENST00000618944	NECTIN1	Q15223	517 aa		13.46	□□□□□ -0.25
TP53-223	ENST00000618944	NECAB1	Q8N987	351 aa		13.46	□□□□□ -0.25
TP53-223	ENST00000618944	CNPY2	Q9Y2B0	182 aa		13.46	□□□□□ -0.25
TP53-223	ENST00000618944	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.46	□□□□□ -0.25
TP53-223	ENST00000618944	CYP46A1	Q9Y6A2	500 aa		13.46	□□□□□ -0.25
TP53-223	ENST00000618944		A0A0D9SFI3	127 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	STX6	O43752	255 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	ZSCAN22	P10073	491 aa	Predicted RBP	13.45	□□□□□ -0.26
TP53-223	ENST00000618944	ZKSCAN1	P17029	563 aa	Predicted RBP	13.45	□□□□□ -0.26
TP53-223	ENST00000618944	CREB3L3	Q68CJ9	461 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	UBE3B	Q7Z3V4	1068 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	ZSWIM6	Q9HCJ5	1215 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	CCDC171	Q6TFL3	1326 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.45	□□□□□ -0.26
TP53-223	ENST00000618944	CABP4	P57796	275 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	TCEANC2	Q96MN5	208 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	MEGF6	O75095	1541 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	TMEM94	Q12767	1356 aa		13.45	□□□□□ -0.26
TP53-223	ENST00000618944	GJB2	P29033	226 aa		13.44	□□□□□ -0.26
TP53-223	ENST00000618944	TFCP2	Q12800	502 aa		13.44	□□□□□ -0.26
TP53-223	ENST00000618944	VPS53	Q5VIR6	699 aa		13.44	□□□□□ -0.26
TP53-223	ENST00000618944	DCAF5	Q96JK2	942 aa		13.44	□□□□□ -0.26
TP53-223	ENST00000618944	TAF6L	Q9Y6J9	622 aa		13.44	□□□□□ -0.26
TP53-223	ENST00000618944	ZNF142	P52746	1687 aa	Predicted RBP	13.44	□□□□□ -0.26
TP53-223	ENST00000618944	LRP10	Q7Z4F1	713 aa		13.44	□□□□□ -0.26
TP53-223	ENST00000618944	MAP4K1	Q92918	833 aa		13.44	□□□□□ -0.26
TP53-223	ENST00000618944	FMNL2	Q96PY5	1086 aa		13.44	□□□□□ -0.26
TP53-223	ENST00000618944		A0A087WZG4	1122 aa		13.43	□□□□□ -0.26
TP53-223	ENST00000618944	SLC27A2	O14975	620 aa		13.43	□□□□□ -0.26
TP53-223	ENST00000618944	CHGB	P05060	677 aa		13.43	□□□□□ -0.26
TP53-223	ENST00000618944	ME3	Q16798	604 aa		13.43	□□□□□ -0.26
TP53-223	ENST00000618944	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.43	□□□□□ -0.26
TP53-223	ENST00000618944	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
TP53-223	ENST00000618944	RGPD5	Q99666	1765 aa		13.43	□□□□□ -0.26
TP53-223	ENST00000618944	HIP1	O00291	1037 aa		13.42	□□□□□ -0.26
TP53-223	ENST00000618944	FIBP	O43427	364 aa		13.42	□□□□□ -0.26
TP53-223	ENST00000618944	PTPN12	Q05209	780 aa	Known RBP	13.42	□□□□□ -0.26
TP53-223	ENST00000618944	TPCN1	Q9ULQ1	816 aa		13.42	□□□□□ -0.26
TP53-223	ENST00000618944	CHMP3	Q9Y3E7	222 aa		13.42	□□□□□ -0.26
TP53-223	ENST00000618944	F13A1	P00488	732 aa		13.42	□□□□□ -0.26
TP53-223	ENST00000618944	KCNB2	Q92953	911 aa		13.42	□□□□□ -0.26
TP53-223	ENST00000618944	TM6SF1	Q9BZW5	370 aa		13.42	□□□□□ -0.26
TP53-223	ENST00000618944	DBNL	Q9UJU6	430 aa	Known RBP	13.42	□□□□□ -0.26
TP53-223	ENST00000618944	RFX5	P48382	616 aa	Predicted RBP	13.41	□□□□□ -0.26
TP53-223	ENST00000618944	ST3GAL1	Q11201	340 aa		13.41	□□□□□ -0.26
TP53-223	ENST00000618944	ZSCAN30	Q86W11	494 aa		13.41	□□□□□ -0.26
TP53-223	ENST00000618944	SYAP1	Q96A49	352 aa	Predicted RBP	13.41	□□□□□ -0.26
TP53-223	ENST00000618944	DNAJC2	Q99543	621 aa	Known RBP	13.41	□□□□□ -0.26
TP53-223	ENST00000618944	TSPY26P	Q9H489	355 aa		13.41	□□□□□ -0.26
TP53-223	ENST00000618944	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.41	□□□□□ -0.26
TP53-223	ENST00000618944	VPS37C	A5D8V6	355 aa	Predicted RBP	13.41	□□□□□ -0.26
TP53-223	ENST00000618944	ADAMTSL3	P82987	1691 aa		13.41	□□□□□ -0.26
TP53-223	ENST00000618944	TNNI3K	Q59H18	835 aa		13.41	□□□□□ -0.26
TP53-223	ENST00000618944	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.41	□□□□□ -0.26
TP53-223	ENST00000618944	COPRS	Q9NQ92	184 aa		13.41	□□□□□ -0.26
TP53-223	ENST00000618944	FPGT-TNNI3K	V9GXZ4	949 aa		13.41	□□□□□ -0.26
TP53-223	ENST00000618944	MST1R	Q04912	1400 aa		13.4	□□□□□ -0.26
TP53-223	ENST00000618944	DNM1	Q05193	864 aa	Known RBP	13.4	□□□□□ -0.26
TP53-223	ENST00000618944	LMBR1L	Q6UX01	489 aa		13.4	□□□□□ -0.26
TP53-223	ENST00000618944	DBNDD2	Q9BQY9	259 aa		13.4	□□□□□ -0.26
TP53-223	ENST00000618944	MTMR6	Q9Y217	621 aa		13.4	□□□□□ -0.26
TP53-223	ENST00000618944	MSN	P26038	577 aa	Known RBP	13.4	□□□□□ -0.26
TP53-223	ENST00000618944	CCDC129	Q6ZRS4	1044 aa		13.4	□□□□□ -0.26
TP53-223	ENST00000618944	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.4	□□□□□ -0.26
TP53-223	ENST00000618944	PSMA5	P28066	241 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	STK3	Q13188	491 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	BLOC1S2	Q6QNY1	142 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	CADPS2	Q86UW7	1296 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	SEC62	Q99442	399 aa	Known RBP	13.39	□□□□□ -0.27
TP53-223	ENST00000618944	NBPF26	B4DH59	902 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	A1BG	P04217	495 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	NBPF14	Q5TI25	921 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	NBPF10	Q6P3W6	841 aa	Known RBP	13.39	□□□□□ -0.27
TP53-223	ENST00000618944	TTLL7	Q6ZT98	887 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	NBPF15	Q8N660	670 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	PDLIM2	Q96JY6	352 aa		13.39	□□□□□ -0.27
TP53-223	ENST00000618944	TAF5L	O75529	589 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	ATP5J	P18859	108 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	HSPA2	P54652	639 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	RNF20	Q5VTR2	975 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	LARP1B	Q659C4	914 aa	Known RBP	13.38	□□□□□ -0.27
TP53-223	ENST00000618944	TOM1L2	Q6ZVM7	507 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	DDX46	Q7L014	1031 aa	Known RBP	13.38	□□□□□ -0.27
TP53-223	ENST00000618944	FERMT3	Q86UX7	667 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	PLBD2	Q8NHP8	589 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	NEUROD6	Q96NK8	337 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	SLFNL1	Q499Z3	407 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	FAM173B	Q6P4H8	233 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	ATP6V1D	Q9Y5K8	247 aa		13.38	□□□□□ -0.27
TP53-223	ENST00000618944	SPATA31A3	Q5VYP0	1347 aa		13.37	□□□□□ -0.27
TP53-223	ENST00000618944	PHF14	O94880	888 aa		13.37	□□□□□ -0.27
TP53-223	ENST00000618944	RPS6KB1	P23443	525 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms