RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 TRIM27P14373 513 aa25.05■■□□□ 1.6
UPF3A-211ENST00000618700 MKRN4PQ13434 485 aaPredicted RBP25.05■■□□□ 1.6
UPF3A-211ENST00000618700 PARP10Q53GL7 1025 aa25.05■■□□□ 1.6
UPF3A-211ENST00000618700 ATF7IPQ6VMQ6 1270 aa25.05■■□□□ 1.6
UPF3A-211ENST00000618700 NLRP10Q86W26 655 aa25.05■■□□□ 1.6
UPF3A-211ENST00000618700 ABCC4O15439 1325 aa25.05■■□□□ 1.6
UPF3A-211ENST00000618700 AFDNP55196 1824 aaKnown RBP25.05■■□□□ 1.6
UPF3A-211ENST00000618700 SRCAPQ6ZRS2 3230 aa25.05■■□□□ 1.6
UPF3A-211ENST00000618700 ATP5J2-PTCD1G3V325 749 aa25.04■■□□□ 1.6
UPF3A-211ENST00000618700 NEXNQ0ZGT2 675 aa25.04■■□□□ 1.6
UPF3A-211ENST00000618700 BEND3Q5T5X7 828 aa25.04■■□□□ 1.6
UPF3A-211ENST00000618700 ZKSCAN2Q63HK3 967 aa25.04■■□□□ 1.6
UPF3A-211ENST00000618700 LINS1Q8NG48 757 aa25.04■■□□□ 1.6
UPF3A-211ENST00000618700 POLD1P28340 1107 aa25.03■■□□□ 1.6
UPF3A-211ENST00000618700 PARP3Q9Y6F1 533 aa25.03■■□□□ 1.6
UPF3A-211ENST00000618700 SERPINB2P05120 415 aa25.02■■□□□ 1.6
UPF3A-211ENST00000618700 CCDC191Q8NCU4 936 aa25.02■■□□□ 1.6
UPF3A-211ENST00000618700 TNNQ9UQP3 1299 aa25.02■■□□□ 1.6
UPF3A-211ENST00000618700 NEURL1BA8MQ27 555 aa25.01■■□□□ 1.59
UPF3A-211ENST00000618700 NTSR2O95665 410 aa25.01■■□□□ 1.59
UPF3A-211ENST00000618700 CWF19L2Q2TBE0 894 aaKnown RBP25.01■■□□□ 1.59
UPF3A-211ENST00000618700 SUSD4Q5VX71 490 aa25.01■■□□□ 1.59
UPF3A-211ENST00000618700 SLC4A10Q6U841 1118 aa25.01■■□□□ 1.59
UPF3A-211ENST00000618700 C10orf71Q711Q0 1435 aa25■■□□□ 1.59
UPF3A-211ENST00000618700 RNF123Q5XPI4 1314 aa24.99■■□□□ 1.59
UPF3A-211ENST00000618700 PPP1R42Q7Z4L9 355 aa24.99■■□□□ 1.59
UPF3A-211ENST00000618700 NBPF5PQ86XG9 351 aaPredicted RBP24.99■■□□□ 1.59
UPF3A-211ENST00000618700 SRCIN1Q9C0H9 1055 aa24.99■■□□□ 1.59
UPF3A-211ENST00000618700 CWC25Q9NXE8 425 aaPredicted RBP24.99■■□□□ 1.59
UPF3A-211ENST00000618700 PPP1R1BQ9UD71 204 aaPredicted RBP24.99■■□□□ 1.59
UPF3A-211ENST00000618700 ALDH1L1O75891 902 aa24.98■■□□□ 1.59
UPF3A-211ENST00000618700 PRR5LQ6MZQ0 368 aa24.98■■□□□ 1.59
UPF3A-211ENST00000618700 CNBD1Q8NA66 436 aa24.98■■□□□ 1.59
UPF3A-211ENST00000618700 UTP14AQ9BVJ6 771 aaKnown RBP24.98■■□□□ 1.59
UPF3A-211ENST00000618700 NYXQ9GZU5 481 aa24.98■■□□□ 1.59
UPF3A-211ENST00000618700 RIC1Q4ADV7 1423 aa24.96■■□□□ 1.59
UPF3A-211ENST00000618700 ABCC12Q96J65 1359 aa24.96■■□□□ 1.59
UPF3A-211ENST00000618700 KIF13BQ9NQT8 1826 aa24.96■■□□□ 1.59
UPF3A-211ENST00000618700 FAM177BA6PVY3 158 aa24.96■■□□□ 1.59
UPF3A-211ENST00000618700 PLIN1O60240 522 aa24.96■■□□□ 1.59
UPF3A-211ENST00000618700 CCT4P50991 539 aaKnown RBP24.96■■□□□ 1.59
UPF3A-211ENST00000618700 GCKRQ14397 625 aa24.96■■□□□ 1.59
UPF3A-211ENST00000618700 INTS3Q68E01 1043 aaKnown RBP24.96■■□□□ 1.59
UPF3A-211ENST00000618700 TPTE2Q6XPS3 522 aa24.96■■□□□ 1.59
UPF3A-211ENST00000618700 DZIP1LQ8IYY4 767 aaKnown RBP24.96■■□□□ 1.59
UPF3A-211ENST00000618700 CLUAP1Q96AJ1 413 aa24.96■■□□□ 1.59
UPF3A-211ENST00000618700 RLBP1P12271 317 aa24.95■■□□□ 1.58
UPF3A-211ENST00000618700 RRP1P56182 461 aaKnown RBP24.95■■□□□ 1.58
UPF3A-211ENST00000618700 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.95■■□□□ 1.58
UPF3A-211ENST00000618700 TRMT112Q9UI30 125 aaKnown RBP24.95■■□□□ 1.58
UPF3A-211ENST00000618700 PCCAP05165 728 aaPredicted RBP24.94■■□□□ 1.58
UPF3A-211ENST00000618700 NUTM1Q86Y26 1132 aa24.94■■□□□ 1.58
UPF3A-211ENST00000618700 ZBTB38Q8NAP3 1195 aaPredicted RBP24.94■■□□□ 1.58
UPF3A-211ENST00000618700 LAMB2P55268 1798 aa24.94■■□□□ 1.58
UPF3A-211ENST00000618700 ANKRD31Q8N7Z5 1873 aa24.94■■□□□ 1.58
UPF3A-211ENST00000618700 SH3TC1Q8TE82 1336 aa24.93■■□□□ 1.58
UPF3A-211ENST00000618700 FTSJ3Q8IY81 847 aaKnown RBP24.93■■□□□ 1.58
UPF3A-211ENST00000618700 TNRC6CQ9HCJ0 1690 aaKnown RBP24.93■■□□□ 1.58
UPF3A-211ENST00000618700 ST5P78524 1137 aa24.92■■□□□ 1.58
UPF3A-211ENST00000618700 ERFEQ4G0M1 354 aa24.92■■□□□ 1.58
UPF3A-211ENST00000618700 TMEM57Q8N5G2 664 aa24.92■■□□□ 1.58
UPF3A-211ENST00000618700 FAM89AQ96GI7 184 aa24.92■■□□□ 1.58
UPF3A-211ENST00000618700 DDX60Q8IY21 1712 aaKnown RBP24.92■■□□□ 1.58
UPF3A-211ENST00000618700 H7C1W4 665 aa24.91■■□□□ 1.58
UPF3A-211ENST00000618700 MS4A1P11836 297 aa24.91■■□□□ 1.58
UPF3A-211ENST00000618700 CASP7P55210 303 aa24.91■■□□□ 1.58
UPF3A-211ENST00000618700 SYNE4Q8N205 404 aa24.91■■□□□ 1.58
UPF3A-211ENST00000618700 UTYO14607 1347 aa24.9■■□□□ 1.58
UPF3A-211ENST00000618700 CDHR2Q9BYE9 1310 aa24.9■■□□□ 1.58
UPF3A-211ENST00000618700 GRM8O00222 908 aa24.9■■□□□ 1.58
UPF3A-211ENST00000618700 NPHP1O15259 732 aa24.9■■□□□ 1.58
UPF3A-211ENST00000618700 PDE3AQ14432 1141 aa24.9■■□□□ 1.58
UPF3A-211ENST00000618700 CCDC24Q8N4L8 307 aa24.9■■□□□ 1.58
UPF3A-211ENST00000618700 PANK1Q8TE04 598 aa24.9■■□□□ 1.58
UPF3A-211ENST00000618700 KIAA1551Q9HCM1 1747 aa24.89■■□□□ 1.58
UPF3A-211ENST00000618700 GTF2E1P29083 439 aaPredicted RBP24.89■■□□□ 1.58
UPF3A-211ENST00000618700 SLC10A5Q5PT55 438 aa24.89■■□□□ 1.58
UPF3A-211ENST00000618700 C20orf194Q5TEA3 1177 aa24.89■■□□□ 1.58
UPF3A-211ENST00000618700 UBE3BQ7Z3V4 1068 aa24.89■■□□□ 1.58
UPF3A-211ENST00000618700 BRIP1Q9BX63 1249 aa24.89■■□□□ 1.58
UPF3A-211ENST00000618700 RTL5Q5HYW3 569 aaPredicted RBP24.88■■□□□ 1.57
UPF3A-211ENST00000618700 USP44Q9H0E7 712 aa24.88■■□□□ 1.57
UPF3A-211ENST00000618700 JARID2Q92833 1246 aaPredicted RBP24.87■■□□□ 1.57
UPF3A-211ENST00000618700 C9orf78Q9NZ63 289 aaPredicted RBP24.87■■□□□ 1.57
UPF3A-211ENST00000618700 CD2APQ9Y5K6 639 aa24.87■■□□□ 1.57
UPF3A-211ENST00000618700 COL11A2P13942 1736 aaPredicted RBP24.86■■□□□ 1.57
UPF3A-211ENST00000618700 IRS4O14654 1257 aaPredicted RBP24.86■■□□□ 1.57
UPF3A-211ENST00000618700 SUPT16HQ9Y5B9 1047 aaKnown RBP24.86■■□□□ 1.57
UPF3A-211ENST00000618700 KLRG2A4D1S0 409 aaPredicted RBP24.85■■□□□ 1.57
UPF3A-211ENST00000618700 CENPBP07199 599 aaPredicted RBP24.85■■□□□ 1.57
UPF3A-211ENST00000618700 HCLS1P14317 486 aaPredicted RBP24.85■■□□□ 1.57
UPF3A-211ENST00000618700 ITPRIPQ8IWB1 547 aa24.85■■□□□ 1.57
UPF3A-211ENST00000618700 FHDC1Q9C0D6 1143 aaPredicted RBP24.85■■□□□ 1.57
UPF3A-211ENST00000618700 NBPF7P0C2Y1 421 aaPredicted RBP24.84■■□□□ 1.57
UPF3A-211ENST00000618700 MVPQ14764 893 aaKnown RBP24.84■■□□□ 1.57
UPF3A-211ENST00000618700 C3orf67Q6ZVT6 689 aa24.84■■□□□ 1.57
UPF3A-211ENST00000618700 MEIS3Q99687 375 aa24.84■■□□□ 1.57
UPF3A-211ENST00000618700 PLA2G12BQ9BX93 195 aa24.84■■□□□ 1.57
UPF3A-211ENST00000618700 DLEC1Q9Y238 1755 aa24.83■■□□□ 1.57
UPF3A-211ENST00000618700 PDE6BP35913 854 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms