RNA–Protein interactions for RNA: ENST00000606952.5

PMF1-206, Transcript of polyamine modulated factor 1, humanhuman

TSL 1 (best)

Gene PMF1, Length 1,275 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMF1-206ENST00000606952 C1orf115Q9H7X2 142 aa20.69■□□□□ 0.9
PMF1-206ENST00000606952 BCL2L12Q9HB09 334 aa20.69■□□□□ 0.9
PMF1-206ENST00000606952 PCCAP05165 728 aaPredicted RBP20.68■□□□□ 0.9
PMF1-206ENST00000606952 TRAPPC3LQ5T215 181 aa20.68■□□□□ 0.9
PMF1-206ENST00000606952 LRRFIP2Q9Y608 721 aaKnown RBP20.68■□□□□ 0.9
PMF1-206ENST00000606952 UBN2Q6ZU65 1347 aa20.68■□□□□ 0.9
PMF1-206ENST00000606952 CDHR2Q9BYE9 1310 aa20.68■□□□□ 0.9
PMF1-206ENST00000606952 MYH3P11055 1940 aa20.68■□□□□ 0.9
PMF1-206ENST00000606952 IGHDP01880 384 aa20.67■□□□□ 0.9
PMF1-206ENST00000606952 ZNF827Q17R98 1081 aa20.67■□□□□ 0.9
PMF1-206ENST00000606952 KAZALD1Q96I82 304 aa20.67■□□□□ 0.9
PMF1-206ENST00000606952 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.66■□□□□ 0.9
PMF1-206ENST00000606952 ATP8B2P98198 1209 aa20.66■□□□□ 0.9
PMF1-206ENST00000606952 EN1Q05925 392 aaPredicted RBP20.66■□□□□ 0.9
PMF1-206ENST00000606952 EZH2Q15910 746 aaKnown RBP20.66■□□□□ 0.9
PMF1-206ENST00000606952 ZBTB38Q8NAP3 1195 aaPredicted RBP20.66■□□□□ 0.9
PMF1-206ENST00000606952 FLAD1Q8NFF5 587 aa20.66■□□□□ 0.9
PMF1-206ENST00000606952 PLA2G12BQ9BX93 195 aa20.66■□□□□ 0.9
PMF1-206ENST00000606952 DDX60Q8IY21 1712 aaKnown RBP20.65■□□□□ 0.9
PMF1-206ENST00000606952 RABL6Q3YEC7 729 aaPredicted RBP20.65■□□□□ 0.9
PMF1-206ENST00000606952 USPL1Q5W0Q7 1092 aa20.65■□□□□ 0.9
PMF1-206ENST00000606952 DEFB132Q7Z7B7 95 aa20.65■□□□□ 0.9
PMF1-206ENST00000606952 UPF1Q92900 1129 aaKnown RBP eCLIP20.65■□□□□ 0.9
PMF1-206ENST00000606952 SUCLG2Q96I99 432 aa20.65■□□□□ 0.9
PMF1-206ENST00000606952 ZPR1O75312 459 aa20.64■□□□□ 0.89
PMF1-206ENST00000606952 UBE3BQ7Z3V4 1068 aa20.64■□□□□ 0.89
PMF1-206ENST00000606952 SMC5Q8IY18 1101 aa20.64■□□□□ 0.89
PMF1-206ENST00000606952 ARXQ96QS3 562 aa20.64■□□□□ 0.89
PMF1-206ENST00000606952 HMMRO75330 724 aa20.63■□□□□ 0.89
PMF1-206ENST00000606952 RFC4P35249 363 aa20.63■□□□□ 0.89
PMF1-206ENST00000606952 POLA2Q14181 598 aa20.63■□□□□ 0.89
PMF1-206ENST00000606952 SSH3Q8TE77 659 aa20.63■□□□□ 0.89
PMF1-206ENST00000606952 SRP68Q9UHB9 627 aaKnown RBP20.63■□□□□ 0.89
PMF1-206ENST00000606952 NTSR2O95665 410 aa20.62■□□□□ 0.89
PMF1-206ENST00000606952 GPTP24298 496 aa20.62■□□□□ 0.89
PMF1-206ENST00000606952 SMIM5Q71RC9 77 aa20.62■□□□□ 0.89
PMF1-206ENST00000606952 CASZ1Q86V15 1759 aa20.62■□□□□ 0.89
PMF1-206ENST00000606952 PHF14O94880 888 aa20.61■□□□□ 0.89
PMF1-206ENST00000606952 SUSD4Q5VX71 490 aa20.61■□□□□ 0.89
PMF1-206ENST00000606952 GCC1Q96CN9 775 aa20.61■□□□□ 0.89
PMF1-206ENST00000606952 DCTPP1Q9H773 170 aa20.61■□□□□ 0.89
PMF1-206ENST00000606952 ANO8Q9HCE9 1232 aaPredicted RBP20.61■□□□□ 0.89
PMF1-206ENST00000606952 NIP7Q9Y221 180 aaKnown RBP eCLIP20.61■□□□□ 0.897e-6■■■■■ 33.4
PMF1-206ENST00000606952 NRXN2Q9P2S2 1712 aa20.61■□□□□ 0.89
PMF1-206ENST00000606952 PNPLA7Q6ZV29 1317 aa20.6■□□□□ 0.89
PMF1-206ENST00000606952 PNMA6EA0A0J9YXQ4 647 aa20.6■□□□□ 0.89
PMF1-206ENST00000606952 GYS1P13807 737 aa20.6■□□□□ 0.89
PMF1-206ENST00000606952 SLC15A2Q16348 729 aa20.6■□□□□ 0.89
PMF1-206ENST00000606952 TBC1D9BQ66K14 1250 aa20.6■□□□□ 0.89
PMF1-206ENST00000606952 PPP1R42Q7Z4L9 355 aa20.6■□□□□ 0.89
PMF1-206ENST00000606952 BICC1Q9H694 974 aaKnown RBP20.6■□□□□ 0.89
PMF1-206ENST00000606952 RIC1Q4ADV7 1423 aa20.6■□□□□ 0.89
PMF1-206ENST00000606952 FOXO4P98177 505 aa20.59■□□□□ 0.89
PMF1-206ENST00000606952 EPHA10Q5JZY3 1008 aa20.59■□□□□ 0.89
PMF1-206ENST00000606952 UTP14AQ9BVJ6 771 aaKnown RBP20.59■□□□□ 0.89
PMF1-206ENST00000606952 TFCP2L1Q9NZI6 479 aa20.59■□□□□ 0.89
PMF1-206ENST00000606952 SH3TC1Q8TE82 1336 aa20.58■□□□□ 0.89
PMF1-206ENST00000606952 COL23A1Q86Y22 540 aaPredicted RBP20.58■□□□□ 0.89
PMF1-206ENST00000606952 CARMIL3Q8ND23 1372 aa20.58■□□□□ 0.88
PMF1-206ENST00000606952 FAM89AQ96GI7 184 aa20.57■□□□□ 0.88
PMF1-206ENST00000606952 STK32BQ9NY57 414 aa20.57■□□□□ 0.88
PMF1-206ENST00000606952 TRMT112Q9UI30 125 aaKnown RBP20.57■□□□□ 0.88
PMF1-206ENST00000606952 LRP5O75197 1615 aa20.56■□□□□ 0.88
PMF1-206ENST00000606952 CSF1RP07333 972 aa20.56■□□□□ 0.88
PMF1-206ENST00000606952 HSP90B1P14625 803 aaKnown RBP20.56■□□□□ 0.88
PMF1-206ENST00000606952 TM4SF1P30408 202 aa20.56■□□□□ 0.88
PMF1-206ENST00000606952 NYXQ9GZU5 481 aa20.56■□□□□ 0.88
PMF1-206ENST00000606952 NOP58Q9Y2X3 529 aaKnown RBP20.56■□□□□ 0.88
PMF1-206ENST00000606952 IRS4O14654 1257 aaPredicted RBP20.55■□□□□ 0.88
PMF1-206ENST00000606952 SRGAP3O43295 1099 aa20.55■□□□□ 0.88
PMF1-206ENST00000606952 RFX5P48382 616 aaPredicted RBP20.55■□□□□ 0.88
PMF1-206ENST00000606952 NFIXQ14938 502 aa20.55■□□□□ 0.88
PMF1-206ENST00000606952 SLC10A5Q5PT55 438 aa20.55■□□□□ 0.88
PMF1-206ENST00000606952 JARID2Q92833 1246 aaPredicted RBP20.55■□□□□ 0.88
PMF1-206ENST00000606952 SETDB2Q96T68 719 aa20.55■□□□□ 0.88
PMF1-206ENST00000606952 RTL9Q8NET4 1388 aa20.55■□□□□ 0.88
PMF1-206ENST00000606952 PDE8AO60658 829 aa20.54■□□□□ 0.88
PMF1-206ENST00000606952 CTSWP56202 376 aa20.52■□□□□ 0.88
PMF1-206ENST00000606952 NUCB1Q02818 461 aa20.52■□□□□ 0.88
PMF1-206ENST00000606952 LMBR1LQ6UX01 489 aa20.52■□□□□ 0.88
PMF1-206ENST00000606952 NLGN1Q8N2Q7 840 aa20.52■□□□□ 0.88
PMF1-206ENST00000606952 COPRSQ9NQ92 184 aa20.52■□□□□ 0.88
PMF1-206ENST00000606952 TNRC6CQ9HCJ0 1690 aaKnown RBP20.51■□□□□ 0.87
PMF1-206ENST00000606952 ABCC12Q96J65 1359 aa20.51■□□□□ 0.87
PMF1-206ENST00000606952 SYNE4Q8N205 404 aa20.51■□□□□ 0.87
PMF1-206ENST00000606952 RAB11FIP3O75154 756 aa20.5■□□□□ 0.87
PMF1-206ENST00000606952 HSP90AB4PQ58FF6 505 aa20.5■□□□□ 0.87
PMF1-206ENST00000606952 RTL5Q5HYW3 569 aaPredicted RBP20.5■□□□□ 0.87
PMF1-206ENST00000606952 TPTE2Q6XPS3 522 aa20.5■□□□□ 0.87
PMF1-206ENST00000606952 TTLL11Q8NHH1 800 aa20.5■□□□□ 0.87
PMF1-206ENST00000606952 PDZRN3Q9UPQ7 1066 aa20.5■□□□□ 0.87
PMF1-206ENST00000606952 PTPN12Q05209 780 aaKnown RBP20.49■□□□□ 0.87
PMF1-206ENST00000606952 BICDL1Q6ZP65 573 aa20.49■□□□□ 0.87
PMF1-206ENST00000606952 NBPF5PQ86XG9 351 aaPredicted RBP20.49■□□□□ 0.87
PMF1-206ENST00000606952 FBXO3Q9UK99 471 aa20.49■□□□□ 0.87
PMF1-206ENST00000606952 POLRMTO00411 1230 aaKnown RBP20.48■□□□□ 0.87
PMF1-206ENST00000606952 DDR1Q08345 913 aa20.48■□□□□ 0.87
PMF1-206ENST00000606952 SF3B3Q15393 1217 aaKnown RBP20.48■□□□□ 0.87
PMF1-206ENST00000606952 ERFEQ4G0M1 354 aa20.48■□□□□ 0.87
PMF1-206ENST00000606952 ANKRD31Q8N7Z5 1873 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms