RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 MYL6BP14649 208 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 GPTP24298 496 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 DEFB115Q30KQ5 88 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 NCBP3Q53F19 620 aaKnown RBP6.86□□□□□ -1.31
VRK3-226ENST00000602029 CLEC4GQ6UXB4 293 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 NUTM1Q86Y26 1132 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 NIM1KQ8IY84 436 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 CNTROBQ8N137 903 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 ZBTB3Q9H5J0 574 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 ZNF408Q9H9D4 720 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 MKI67P46013 3256 aaKnown RBP6.86□□□□□ -1.31
VRK3-226ENST00000602029 SCN7AQ01118 1682 aa6.86□□□□□ -1.31
VRK3-226ENST00000602029 COL11A2P13942 1736 aaPredicted RBP6.85□□□□□ -1.31
VRK3-226ENST00000602029 NRXN2Q9P2S2 1712 aa6.85□□□□□ -1.31
VRK3-226ENST00000602029 WDR33Q9C0J8 1336 aaKnown RBP6.85□□□□□ -1.31
VRK3-226ENST00000602029 MAPK8IP3Q9UPT6 1336 aa6.85□□□□□ -1.31
VRK3-226ENST00000602029 ITGBL1O95965 494 aaPredicted RBP6.85□□□□□ -1.31
VRK3-226ENST00000602029 SOX10P56693 466 aa6.85□□□□□ -1.31
VRK3-226ENST00000602029 PRPF38BQ5VTL8 546 aaKnown RBP6.85□□□□□ -1.31
VRK3-226ENST00000602029 RBM17Q96I25 401 aaKnown RBP6.85□□□□□ -1.31
VRK3-226ENST00000602029 RSPH6AQ9H0K4 717 aa6.85□□□□□ -1.31
VRK3-226ENST00000602029 RASSF10A6NK89 507 aa6.84□□□□□ -1.31
VRK3-226ENST00000602029 PPEF1O14829 653 aaPredicted RBP6.84□□□□□ -1.31
VRK3-226ENST00000602029 PPIP5K2O43314 1243 aa6.84□□□□□ -1.31
VRK3-226ENST00000602029 ECE1P42892 770 aa6.84□□□□□ -1.31
VRK3-226ENST00000602029 MAP2K1Q02750 393 aaPredicted RBP6.84□□□□□ -1.31
VRK3-226ENST00000602029 TAF7Q15545 349 aaPredicted RBP6.84□□□□□ -1.31
VRK3-226ENST00000602029 HLFQ16534 295 aa6.84□□□□□ -1.31
VRK3-226ENST00000602029 GPC2Q8N158 579 aa6.84□□□□□ -1.31
VRK3-226ENST00000602029 L3MBTL3Q96JM7 780 aaPredicted RBP6.84□□□□□ -1.31
VRK3-226ENST00000602029 BCL2L13Q9BXK5 485 aa6.84□□□□□ -1.31
VRK3-226ENST00000602029 SLX4Q8IY92 1834 aa6.83□□□□□ -1.32
VRK3-226ENST00000602029 NBPF26B4DH59 902 aa6.83□□□□□ -1.32
VRK3-226ENST00000602029 EIF2S2P20042 333 aaKnown RBP6.83□□□□□ -1.32
VRK3-226ENST00000602029 FMR1Q06787 632 aaKnown RBP eCLIP6.83□□□□□ -1.32
VRK3-226ENST00000602029 NBPF10Q6P3W6 841 aaKnown RBP6.83□□□□□ -1.32
VRK3-226ENST00000602029 PPP1R42Q7Z4L9 355 aa6.83□□□□□ -1.32
VRK3-226ENST00000602029 NBPF15Q8N660 670 aa6.83□□□□□ -1.32
VRK3-226ENST00000602029 PNISRQ8TF01 805 aaKnown RBP6.83□□□□□ -1.32
VRK3-226ENST00000602029 CAPNS2Q96L46 248 aa6.83□□□□□ -1.32
VRK3-226ENST00000602029 CUL9Q8IWT3 2517 aa6.83□□□□□ -1.32
VRK3-226ENST00000602029 CEMIPQ8WUJ3 1361 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 UBR2Q8IWV8 1755 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 COL3A1P02461 1466 aaPredicted RBP6.82□□□□□ -1.32
VRK3-226ENST00000602029 G3V3G9 751 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 TRAF5O00463 557 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 PER1O15534 1290 aaPredicted RBP6.82□□□□□ -1.32
VRK3-226ENST00000602029 PPP2R1AP30153 589 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 EPS15P42566 896 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 AIMP1Q12904 312 aaKnown RBP6.82□□□□□ -1.32
VRK3-226ENST00000602029 AOC3Q16853 763 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 DCAF8Q5TAQ9 597 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 CC2D2BQ6DHV5 1058 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 CYP4F22Q6NT55 531 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 TTLL7Q6ZT98 887 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 NECTIN2Q92692 538 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 ZNF428Q96B54 188 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 NLRP3Q96P20 1036 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 GPR101Q96P66 508 aaPredicted RBP6.82□□□□□ -1.32
VRK3-226ENST00000602029 THUMPD2Q9BTF0 503 aaKnown RBP6.82□□□□□ -1.32
VRK3-226ENST00000602029 DDX21Q9NR30 783 aaKnown RBP eCLIP6.82□□□□□ -1.32
VRK3-226ENST00000602029 ABCC12Q96J65 1359 aa6.82□□□□□ -1.32
VRK3-226ENST00000602029 MAP3K15Q6ZN16 1313 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 A0A0C4DFX4 3053 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 FZD9O00144 591 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 HTATSF1O43719 755 aaKnown RBP6.81□□□□□ -1.32
VRK3-226ENST00000602029 AOC2O75106 756 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 CELF2O95319 508 aaKnown RBP6.81□□□□□ -1.32
VRK3-226ENST00000602029 DGKZQ13574 1117 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 SUSD4Q5VX71 490 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 DPP8Q6V1X1 898 aaPredicted RBP6.81□□□□□ -1.32
VRK3-226ENST00000602029 SUPT20HQ8NEM7 779 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 C7orf43Q8WVR3 580 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 PSMD1Q99460 953 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 TSPYL4Q9UJ04 414 aa6.81□□□□□ -1.32
VRK3-226ENST00000602029 LAS1LQ9Y4W2 734 aaKnown RBP6.81□□□□□ -1.32
VRK3-226ENST00000602029 ARFGEF2Q9Y6D5 1785 aa6.8□□□□□ -1.32
VRK3-226ENST00000602029 ERVV-1B6SEH8 477 aa6.8□□□□□ -1.32
VRK3-226ENST00000602029 RAD17O75943 681 aa6.8□□□□□ -1.32
VRK3-226ENST00000602029 GRIPAP1Q4V328 841 aa6.8□□□□□ -1.32
VRK3-226ENST00000602029 PARP10Q53GL7 1025 aa6.8□□□□□ -1.32
VRK3-226ENST00000602029 USP50Q70EL3 339 aaPredicted RBP6.8□□□□□ -1.32
VRK3-226ENST00000602029 DDX46Q7L014 1031 aaKnown RBP6.8□□□□□ -1.32
VRK3-226ENST00000602029 UTP14AQ9BVJ6 771 aaKnown RBP6.8□□□□□ -1.32
VRK3-226ENST00000602029 PNNQ9H307 717 aaKnown RBP6.8□□□□□ -1.32
VRK3-226ENST00000602029 NPC1L1Q9UHC9 1359 aa6.8□□□□□ -1.32
VRK3-226ENST00000602029 AKAP11Q9UKA4 1901 aa6.8□□□□□ -1.32
VRK3-226ENST00000602029 COL6A3P12111 3177 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 TRIOBPQ9H2D6 2365 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 ANXA1P04083 346 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 HCLS1P14317 486 aaPredicted RBP6.79□□□□□ -1.32
VRK3-226ENST00000602029 GMPSP49915 693 aaPredicted RBP6.79□□□□□ -1.32
VRK3-226ENST00000602029 SCNN1DP51172 638 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 TNIP1Q15025 636 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 NEUROD2Q15784 382 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 RBM26Q5T8P6 1007 aaKnown RBP6.79□□□□□ -1.32
VRK3-226ENST00000602029 CIAPIN1Q6FI81 312 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 MPNDQ8N594 471 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 CRAMP1Q96RY5 1269 aa6.79□□□□□ -1.32
VRK3-226ENST00000602029 GLIS2Q9BZE0 524 aaPredicted RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms