RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PDGFDQ9GZP0 370 aaPredicted RBP18.1■□□□□ 0.49
UPF1-211ENST00000600868 USP44Q9H0E7 712 aa18.1■□□□□ 0.49
UPF1-211ENST00000600868 CHMP4BQ9H444 224 aaKnown RBP18.1■□□□□ 0.49
UPF1-211ENST00000600868 COL24A1Q17RW2 1714 aa18.09■□□□□ 0.49
UPF1-211ENST00000600868 UTYO14607 1347 aa18.09■□□□□ 0.49
UPF1-211ENST00000600868 GRM8O00222 908 aa18.09■□□□□ 0.49
UPF1-211ENST00000600868 ZBTB7BO15156 539 aaPredicted RBP18.09■□□□□ 0.49
UPF1-211ENST00000600868 NEFLP07196 543 aa18.09■□□□□ 0.49
UPF1-211ENST00000600868 BICDL1Q6ZP65 573 aa18.09■□□□□ 0.49
UPF1-211ENST00000600868 PPP1R42Q7Z4L9 355 aa18.09■□□□□ 0.49
UPF1-211ENST00000600868 CARMIL3Q8ND23 1372 aa18.08■□□□□ 0.49
UPF1-211ENST00000600868 H7C1W4 665 aa18.08■□□□□ 0.48
UPF1-211ENST00000600868 IRX6P78412 446 aaPredicted RBP18.08■□□□□ 0.48
UPF1-211ENST00000600868 SUSD4Q5VX71 490 aa18.08■□□□□ 0.48
UPF1-211ENST00000600868 UTP14AQ9BVJ6 771 aaKnown RBP18.08■□□□□ 0.48
UPF1-211ENST00000600868 C9orf78Q9NZ63 289 aaPredicted RBP18.08■□□□□ 0.48
UPF1-211ENST00000600868 PCCAP05165 728 aaPredicted RBP18.07■□□□□ 0.48
UPF1-211ENST00000600868 GNAI3P08754 354 aa18.07■□□□□ 0.48
UPF1-211ENST00000600868 ZBTB38Q8NAP3 1195 aaPredicted RBP18.07■□□□□ 0.48
UPF1-211ENST00000600868 MEIS3Q99687 375 aa18.07■□□□□ 0.48
UPF1-211ENST00000600868 NYXQ9GZU5 481 aa18.07■□□□□ 0.48
UPF1-211ENST00000600868 PSDA5PKW4 1024 aaPredicted RBP18.06■□□□□ 0.48
UPF1-211ENST00000600868 NTSR2O95665 410 aa18.06■□□□□ 0.48
UPF1-211ENST00000600868 CASP7P55210 303 aa18.06■□□□□ 0.48
UPF1-211ENST00000600868 AAMPQ13685 434 aa18.06■□□□□ 0.48
UPF1-211ENST00000600868 MSL1Q68DK7 614 aa18.06■□□□□ 0.48
UPF1-211ENST00000600868 TRMT112Q9UI30 125 aaKnown RBP18.06■□□□□ 0.48
UPF1-211ENST00000600868 POLRMTO00411 1230 aaKnown RBP18.05■□□□□ 0.48
UPF1-211ENST00000600868 MMP10P09238 476 aa18.05■□□□□ 0.48
UPF1-211ENST00000600868 NBPF7P0C2Y1 421 aaPredicted RBP18.05■□□□□ 0.48
UPF1-211ENST00000600868 DDR1Q08345 913 aa18.05■□□□□ 0.48
UPF1-211ENST00000600868 TPTE2Q6XPS3 522 aa18.05■□□□□ 0.48
UPF1-211ENST00000600868 UBE3BQ7Z3V4 1068 aa18.05■□□□□ 0.48
UPF1-211ENST00000600868 NBPF5PQ86XG9 351 aaPredicted RBP18.05■□□□□ 0.48
UPF1-211ENST00000600868 EXOC6Q8TAG9 804 aa18.05■□□□□ 0.48
UPF1-211ENST00000600868 MTFR1LQ9H019 292 aa18.05■□□□□ 0.48
UPF1-211ENST00000600868 ZBTB40Q9NUA8 1239 aa18.05■□□□□ 0.48
UPF1-211ENST00000600868 HDAC5Q9UQL6 1122 aa18.05■□□□□ 0.48
UPF1-211ENST00000600868 SH3TC1Q8TE82 1336 aa18.04■□□□□ 0.48
UPF1-211ENST00000600868 CDHR2Q9BYE9 1310 aa18.04■□□□□ 0.48
UPF1-211ENST00000600868 SERPINB2P05120 415 aa18.04■□□□□ 0.48
UPF1-211ENST00000600868 UBTFL1P0CB47 393 aaPredicted RBP18.04■□□□□ 0.48
UPF1-211ENST00000600868 FAM177BA6PVY3 158 aa18.03■□□□□ 0.48
UPF1-211ENST00000600868 FAM89AQ96GI7 184 aa18.03■□□□□ 0.48
UPF1-211ENST00000600868 PARP3Q9Y6F1 533 aa18.03■□□□□ 0.48
UPF1-211ENST00000600868 ZBTB7AO95365 584 aa18.02■□□□□ 0.48
UPF1-211ENST00000600868 GNAI2P04899 355 aa18.02■□□□□ 0.48
UPF1-211ENST00000600868 HSP90B1P14625 803 aaKnown RBP18.02■□□□□ 0.48
UPF1-211ENST00000600868 SLC10A5Q5PT55 438 aa18.02■□□□□ 0.48
UPF1-211ENST00000600868 CNBD1Q8NA66 436 aa18.02■□□□□ 0.48
UPF1-211ENST00000600868 JARID2Q92833 1246 aaPredicted RBP18.02■□□□□ 0.48
UPF1-211ENST00000600868 PLA2G12BQ9BX93 195 aa18.02■□□□□ 0.48
UPF1-211ENST00000600868 NRXN2Q9P2S2 1712 aa18.02■□□□□ 0.48
UPF1-211ENST00000600868 IRS4O14654 1257 aaPredicted RBP18.01■□□□□ 0.47
UPF1-211ENST00000600868 GTF2E1P29083 439 aaPredicted RBP18.01■□□□□ 0.47
UPF1-211ENST00000600868 ERFEQ4G0M1 354 aa18.01■□□□□ 0.47
UPF1-211ENST00000600868 RTL5Q5HYW3 569 aaPredicted RBP18.01■□□□□ 0.47
UPF1-211ENST00000600868 ERICH6BQ5W0A0 696 aa18.01■□□□□ 0.47
UPF1-211ENST00000600868 NUTM1Q86Y26 1132 aa18.01■□□□□ 0.47
UPF1-211ENST00000600868 SYNE4Q8N205 404 aa18.01■□□□□ 0.47
UPF1-211ENST00000600868 SUCLG2Q96I99 432 aa18.01■□□□□ 0.47
UPF1-211ENST00000600868 PRR5LQ6MZQ0 368 aa18■□□□□ 0.47
UPF1-211ENST00000600868 KAZALD1Q96I82 304 aa18■□□□□ 0.47
UPF1-211ENST00000600868 LRRFIP2Q9Y608 721 aaKnown RBP18■□□□□ 0.47
UPF1-211ENST00000600868 RIC1Q4ADV7 1423 aa17.99■□□□□ 0.47
UPF1-211ENST00000600868 NPHP1O15259 732 aa17.99■□□□□ 0.47
UPF1-211ENST00000600868 ST5P78524 1137 aa17.99■□□□□ 0.47
UPF1-211ENST00000600868 ATF5Q9Y2D1 282 aaPredicted RBP17.99■□□□□ 0.47
UPF1-211ENST00000600868 LAMB2P55268 1798 aa17.99■□□□□ 0.47
UPF1-211ENST00000600868 PDE8AO60658 829 aa17.98■□□□□ 0.47
UPF1-211ENST00000600868 POLD1P28340 1107 aa17.98■□□□□ 0.47
UPF1-211ENST00000600868 FOXO4P98177 505 aa17.98■□□□□ 0.47
UPF1-211ENST00000600868 DDX60Q8IY21 1712 aaKnown RBP17.98■□□□□ 0.47
UPF1-211ENST00000600868 ABCC12Q96J65 1359 aa17.97■□□□□ 0.47
UPF1-211ENST00000600868 HCLS1P14317 486 aaPredicted RBP17.97■□□□□ 0.47
UPF1-211ENST00000600868 RABL6Q3YEC7 729 aaPredicted RBP17.97■□□□□ 0.47
UPF1-211ENST00000600868 EPHA10Q5JZY3 1008 aa17.97■□□□□ 0.47
UPF1-211ENST00000600868 SGIP1Q9BQI5 828 aa17.97■□□□□ 0.47
UPF1-211ENST00000600868 BICC1Q9H694 974 aaKnown RBP17.97■□□□□ 0.47
UPF1-211ENST00000600868 C1orf115Q9H7X2 142 aa17.97■□□□□ 0.47
UPF1-211ENST00000600868 ANKRD44Q8N8A2 993 aa17.96■□□□□ 0.47
UPF1-211ENST00000600868 CSF1RP07333 972 aa17.95■□□□□ 0.46
UPF1-211ENST00000600868 PTGER2P43116 358 aa17.95■□□□□ 0.46
UPF1-211ENST00000600868 CTSWP56202 376 aa17.95■□□□□ 0.46
UPF1-211ENST00000600868 MTX1Q13505 466 aa17.95■□□□□ 0.46
UPF1-211ENST00000600868 RPAP2Q8IXW5 612 aaPredicted RBP17.95■□□□□ 0.46
UPF1-211ENST00000600868 CCDC24Q8N4L8 307 aa17.95■□□□□ 0.46
UPF1-211ENST00000600868 NLRP3Q96P20 1036 aa17.95■□□□□ 0.46
UPF1-211ENST00000600868 BRIP1Q9BX63 1249 aa17.95■□□□□ 0.46
UPF1-211ENST00000600868 MYH3P11055 1940 aa17.95■□□□□ 0.46
UPF1-211ENST00000600868 KLRG2A4D1S0 409 aaPredicted RBP17.94■□□□□ 0.46
UPF1-211ENST00000600868 SF3B3Q15393 1217 aaKnown RBP17.94■□□□□ 0.46
UPF1-211ENST00000600868 CEP85Q6P2H3 762 aa17.94■□□□□ 0.46
UPF1-211ENST00000600868 TTLL11Q8NHH1 800 aa17.94■□□□□ 0.46
UPF1-211ENST00000600868 SPON1Q9HCB6 807 aa17.94■□□□□ 0.46
UPF1-211ENST00000600868 PCDHB15Q9Y5E8 787 aa17.94■□□□□ 0.46
UPF1-211ENST00000600868 ATP8B2P98198 1209 aa17.93■□□□□ 0.46
UPF1-211ENST00000600868 LMBR1LQ6UX01 489 aa17.93■□□□□ 0.46
UPF1-211ENST00000600868 C10orf71Q711Q0 1435 aa17.92■□□□□ 0.46
UPF1-211ENST00000600868 CCDC152Q4G0S7 254 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms