RNA–Protein interactions for RNA: ENST00000600841.1

NOTCH3-205, Transcript of notch 3, humanhuman

TSL 2

Gene NOTCH3, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-205ENST00000600841 CHMP4AQ9BY43 222 aa21.76■■□□□ 1.07
NOTCH3-205ENST00000600841 ANKRD13DQ6ZTN6 518 aa21.75■■□□□ 1.07
NOTCH3-205ENST00000600841 FAM9BQ8IZU0 186 aa21.75■■□□□ 1.07
NOTCH3-205ENST00000600841 TSR2Q969E8 191 aaKnown RBP21.75■■□□□ 1.07
NOTCH3-205ENST00000600841 IL16Q14005 1332 aa21.75■■□□□ 1.07
NOTCH3-205ENST00000600841 ZC3H4Q9UPT8 1303 aaKnown RBP21.75■■□□□ 1.07
NOTCH3-205ENST00000600841 PRELPP51888 382 aa21.74■■□□□ 1.07
NOTCH3-205ENST00000600841 NLRP10Q86W26 655 aa21.74■■□□□ 1.07
NOTCH3-205ENST00000600841 RPGRQ92834 1020 aaKnown RBP21.74■■□□□ 1.07
NOTCH3-205ENST00000600841 TAOK3Q9H2K8 898 aa21.74■■□□□ 1.07
NOTCH3-205ENST00000600841 RNF123Q5XPI4 1314 aa21.74■■□□□ 1.07
NOTCH3-205ENST00000600841 CCDC30Q5VVM6 783 aa21.73■■□□□ 1.07
NOTCH3-205ENST00000600841 C7orf43Q8WVR3 580 aa21.73■■□□□ 1.07
NOTCH3-205ENST00000600841 SALL2Q9Y467 1007 aaPredicted RBP21.73■■□□□ 1.07
NOTCH3-205ENST00000600841 KDM2BQ8NHM5 1336 aa21.73■■□□□ 1.07
NOTCH3-205ENST00000600841 LTBP3Q9NS15 1303 aa21.73■■□□□ 1.07
NOTCH3-205ENST00000600841 CCDC93Q567U6 631 aa21.72■■□□□ 1.07
NOTCH3-205ENST00000600841 NLRP3Q96P20 1036 aa21.72■■□□□ 1.07
NOTCH3-205ENST00000600841 TIAM2Q8IVF5 1701 aa21.72■■□□□ 1.07
NOTCH3-205ENST00000600841 DICER1Q9UPY3 1922 aaKnown RBP21.71■■□□□ 1.07
NOTCH3-205ENST00000600841 KIF3CO14782 793 aa21.71■■□□□ 1.07
NOTCH3-205ENST00000600841 HOXA10P31260 410 aaPredicted RBP21.71■■□□□ 1.07
NOTCH3-205ENST00000600841 GOLGA2Q08379 1002 aa21.71■■□□□ 1.07
NOTCH3-205ENST00000600841 SLC10A5Q5PT55 438 aa21.71■■□□□ 1.07
NOTCH3-205ENST00000600841 TSPYL6Q8N831 410 aa21.71■■□□□ 1.07
NOTCH3-205ENST00000600841 TRMT112Q9UI30 125 aaKnown RBP21.71■■□□□ 1.07
NOTCH3-205ENST00000600841 WDR63Q8IWG1 891 aa21.7■■□□□ 1.06
NOTCH3-205ENST00000600841 RBM17Q96I25 401 aaKnown RBP21.7■■□□□ 1.06
NOTCH3-205ENST00000600841 NMRK2Q9NPI5 230 aa21.7■■□□□ 1.06
NOTCH3-205ENST00000600841 C3orf67Q6ZVT6 689 aa21.69■■□□□ 1.06
NOTCH3-205ENST00000600841 RIC3Q7Z5B4 369 aa21.69■■□□□ 1.06
NOTCH3-205ENST00000600841 RTKN2Q8IZC4 609 aa21.69■■□□□ 1.06
NOTCH3-205ENST00000600841 PHAXQ9H814 394 aaKnown RBP21.69■■□□□ 1.06
NOTCH3-205ENST00000600841 SH3TC1Q8TE82 1336 aa21.69■■□□□ 1.06
NOTCH3-205ENST00000600841 CRAMP1Q96RY5 1269 aa21.68■■□□□ 1.06
NOTCH3-205ENST00000600841 ISCA1Q9BUE6 129 aa21.68■■□□□ 1.06
NOTCH3-205ENST00000600841 ATP5J2-PTCD1G3V325 749 aa21.67■■□□□ 1.06
NOTCH3-205ENST00000600841 TWISTNBQ3B726 338 aaPredicted RBP21.67■■□□□ 1.06
NOTCH3-205ENST00000600841 OLFM4Q6UX06 510 aa21.67■■□□□ 1.06
NOTCH3-205ENST00000600841 STK31Q9BXU1 1019 aa21.67■■□□□ 1.06
NOTCH3-205ENST00000600841 FANCIQ9NVI1 1328 aa21.66■■□□□ 1.06
NOTCH3-205ENST00000600841 DDX58O95786 925 aaKnown RBP21.66■■□□□ 1.06
NOTCH3-205ENST00000600841 HCLS1P14317 486 aaPredicted RBP21.66■■□□□ 1.06
NOTCH3-205ENST00000600841 FKBP4Q02790 459 aaKnown RBP eCLIP21.66■■□□□ 1.06
NOTCH3-205ENST00000600841 SYNE4Q8N205 404 aa21.66■■□□□ 1.06
NOTCH3-205ENST00000600841 LAMB2P55268 1798 aa21.66■■□□□ 1.06
NOTCH3-205ENST00000600841 GLTPD2A6NH11 291 aa21.65■■□□□ 1.06
NOTCH3-205ENST00000600841 TRIM28Q13263 835 aaKnown RBP21.65■■□□□ 1.06
NOTCH3-205ENST00000600841 CC2D2BQ6DHV5 1058 aa21.65■■□□□ 1.06
NOTCH3-205ENST00000600841 ZNF428Q96B54 188 aa21.65■■□□□ 1.06
NOTCH3-205ENST00000600841 PPEF1O14829 653 aaPredicted RBP21.64■■□□□ 1.05
NOTCH3-205ENST00000600841 C16orf71Q8IYS4 520 aaPredicted RBP21.64■■□□□ 1.05
NOTCH3-205ENST00000600841 RRAGCQ9HB90 399 aa21.64■■□□□ 1.05
NOTCH3-205ENST00000600841 TOMM70O94826 608 aa21.63■■□□□ 1.05
NOTCH3-205ENST00000600841 DPY19L2Q6NUT2 758 aa21.63■■□□□ 1.05
NOTCH3-205ENST00000600841 FAM89AQ96GI7 184 aa21.63■■□□□ 1.05
NOTCH3-205ENST00000600841 ZNF277Q9NRM2 450 aaPredicted RBP21.63■■□□□ 1.05
NOTCH3-205ENST00000600841 ABCC4O15439 1325 aa21.62■■□□□ 1.05
NOTCH3-205ENST00000600841 TCERG1O14776 1098 aaKnown RBP21.62■■□□□ 1.05
NOTCH3-205ENST00000600841 GRIPAP1Q4V328 841 aa21.62■■□□□ 1.05
NOTCH3-205ENST00000600841 MYD88Q99836 296 aa21.62■■□□□ 1.05
NOTCH3-205ENST00000600841 DDX60Q8IY21 1712 aaKnown RBP21.62■■□□□ 1.05
NOTCH3-205ENST00000600841 DDX46Q7L014 1031 aaKnown RBP21.61■■□□□ 1.05
NOTCH3-205ENST00000600841 PSMD1Q99460 953 aa21.61■■□□□ 1.05
NOTCH3-205ENST00000600841 TMX4Q9H1E5 349 aaPredicted RBP21.61■■□□□ 1.05
NOTCH3-205ENST00000600841 MYH16Q9H6N6 1097 aa21.61■■□□□ 1.05
NOTCH3-205ENST00000600841 CACNA1FO60840 1977 aa21.61■■□□□ 1.05
NOTCH3-205ENST00000600841 METTL22Q9BUU2 404 aaPredicted RBP21.6■■□□□ 1.05
NOTCH3-205ENST00000600841 SNED1Q8TER0 1413 aa21.6■■□□□ 1.05
NOTCH3-205ENST00000600841 BBOX1O75936 387 aa21.59■■□□□ 1.05
NOTCH3-205ENST00000600841 SLC4A2P04920 1241 aa21.59■■□□□ 1.05
NOTCH3-205ENST00000600841 EXOSC9Q06265 439 aaKnown RBP21.59■■□□□ 1.05
NOTCH3-205ENST00000600841 RTL5Q5HYW3 569 aaPredicted RBP21.59■■□□□ 1.05
NOTCH3-205ENST00000600841 KSR2Q6VAB6 950 aa21.59■■□□□ 1.05
NOTCH3-205ENST00000600841 CCDC191Q8NCU4 936 aa21.59■■□□□ 1.05
NOTCH3-205ENST00000600841 MAP3K2Q9Y2U5 619 aa21.59■■□□□ 1.05
NOTCH3-205ENST00000600841 ATP6V0A2Q9Y487 856 aa21.59■■□□□ 1.05
NOTCH3-205ENST00000600841 CEP350Q5VT06 3117 aa21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 PI4KAP2A4QPH2 592 aa21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 IRS4O14654 1257 aaPredicted RBP21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 VEGFAP15692 232 aaPredicted RBP21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 IARSP41252 1262 aaKnown RBP21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 PI4KAP1Q8N8J0 262 aa21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 ZBTB38Q8NAP3 1195 aaPredicted RBP21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 RBM46Q8TBY0 533 aaKnown RBP21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 SPINK5Q9NQ38 1064 aaPredicted RBP21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 CWC25Q9NXE8 425 aaPredicted RBP21.58■■□□□ 1.05
NOTCH3-205ENST00000600841 VAMP4O75379 141 aa21.57■■□□□ 1.04
NOTCH3-205ENST00000600841 HSP90B1P14625 803 aaKnown RBP21.57■■□□□ 1.04
NOTCH3-205ENST00000600841 GRAPQ13588 217 aa21.57■■□□□ 1.04
NOTCH3-205ENST00000600841 GRAPLQ8TC17 118 aaPredicted RBP21.57■■□□□ 1.04
NOTCH3-205ENST00000600841 WDR90Q96KV7 1748 aa21.57■■□□□ 1.04
NOTCH3-205ENST00000600841 TAF1P21675 1872 aa21.56■■□□□ 1.04
NOTCH3-205ENST00000600841 SF3B3Q15393 1217 aaKnown RBP21.56■■□□□ 1.04
NOTCH3-205ENST00000600841 G2E3Q7L622 706 aa21.56■■□□□ 1.04
NOTCH3-205ENST00000600841 PCCAP05165 728 aaPredicted RBP21.55■■□□□ 1.04
NOTCH3-205ENST00000600841 HSPA6P17066 643 aa21.55■■□□□ 1.04
NOTCH3-205ENST00000600841 NEXNQ0ZGT2 675 aa21.55■■□□□ 1.04
NOTCH3-205ENST00000600841 SLC51AQ86UW1 340 aa21.55■■□□□ 1.04
NOTCH3-205ENST00000600841 SP8Q8IXZ3 490 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms