RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 KLRG2A4D1S0 409 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-218ENST00000598907 ALDH1B1P30837 517 aa18.63■□□□□ 0.57
SHKBP1-218ENST00000598907 NOGQ13253 232 aa18.63■□□□□ 0.57
SHKBP1-218ENST00000598907 ZNF790Q6PG37 636 aa18.63■□□□□ 0.57
SHKBP1-218ENST00000598907 HHIPL1Q96JK4 782 aa18.63■□□□□ 0.57
SHKBP1-218ENST00000598907 ADARB2Q9NS39 739 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-218ENST00000598907 NIP7Q9Y221 180 aaKnown RBP eCLIP18.63■□□□□ 0.57
SHKBP1-218ENST00000598907 ZNF652Q9Y2D9 606 aa18.63■□□□□ 0.57
SHKBP1-218ENST00000598907 TEFQ10587 303 aa18.62■□□□□ 0.57
SHKBP1-218ENST00000598907 TPTE2Q6XPS3 522 aa18.62■□□□□ 0.57
SHKBP1-218ENST00000598907 NIM1KQ8IY84 436 aa18.62■□□□□ 0.57
SHKBP1-218ENST00000598907 GPRC5DQ9NZD1 345 aa18.62■□□□□ 0.57
SHKBP1-218ENST00000598907 SIPA1L3O60292 1781 aaPredicted RBP18.62■□□□□ 0.57
SHKBP1-218ENST00000598907 TCERG1O14776 1098 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-218ENST00000598907 FMNL2Q96PY5 1086 aa18.61■□□□□ 0.57
SHKBP1-218ENST00000598907 GTF2E1P29083 439 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-218ENST00000598907 HUNKP57058 714 aa18.6■□□□□ 0.57
SHKBP1-218ENST00000598907 ABCC12Q96J65 1359 aa18.59■□□□□ 0.57
SHKBP1-218ENST00000598907 PPIP5K2O43314 1243 aa18.58■□□□□ 0.56
SHKBP1-218ENST00000598907 CLEC4GQ6UXB4 293 aa18.58■□□□□ 0.56
SHKBP1-218ENST00000598907 KCNQ3O43525 872 aa18.57■□□□□ 0.56
SHKBP1-218ENST00000598907 TRPA1O75762 1119 aa18.57■□□□□ 0.56
SHKBP1-218ENST00000598907 GMPSP49915 693 aaPredicted RBP18.57■□□□□ 0.56
SHKBP1-218ENST00000598907 DLK2Q6UY11 383 aa18.57■□□□□ 0.56
SHKBP1-218ENST00000598907 NBPF15Q8N660 670 aa18.57■□□□□ 0.56
SHKBP1-218ENST00000598907 NPC1L1Q9UHC9 1359 aa18.56■□□□□ 0.56
SHKBP1-218ENST00000598907 PRAMEF22A3QJZ6 481 aa18.56■□□□□ 0.56
SHKBP1-218ENST00000598907 AOC3Q16853 763 aa18.56■□□□□ 0.56
SHKBP1-218ENST00000598907 CC2D2BQ6DHV5 1058 aa18.56■□□□□ 0.56
SHKBP1-218ENST00000598907 NUTM1Q86Y26 1132 aa18.56■□□□□ 0.56
SHKBP1-218ENST00000598907 RPGRQ92834 1020 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-218ENST00000598907 SAGE1Q9NXZ1 904 aa18.56■□□□□ 0.56
SHKBP1-218ENST00000598907 KIF23Q02241 960 aaPredicted RBP18.55■□□□□ 0.56
SHKBP1-218ENST00000598907 AMER1Q5JTC6 1135 aaPredicted RBP18.55■□□□□ 0.56
SHKBP1-218ENST00000598907 CTU1Q7Z7A3 348 aaKnown RBP18.55■□□□□ 0.56
SHKBP1-218ENST00000598907 IL17REQ8NFR9 667 aa18.55■□□□□ 0.56
SHKBP1-218ENST00000598907 TRPM4Q8TD43 1214 aa18.55■□□□□ 0.56
SHKBP1-218ENST00000598907 HPS5Q9UPZ3 1129 aa18.55■□□□□ 0.56
SHKBP1-218ENST00000598907 USP16Q9Y5T5 823 aa18.55■□□□□ 0.56
SHKBP1-218ENST00000598907 PPEF1O14829 653 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-218ENST00000598907 DIEXFQ68CQ4 756 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-218ENST00000598907 CDC37L1Q7L3B6 337 aa18.54■□□□□ 0.56
SHKBP1-218ENST00000598907 GCC1Q96CN9 775 aa18.54■□□□□ 0.56
SHKBP1-218ENST00000598907 BCL2L13Q9BXK5 485 aa18.54■□□□□ 0.56
SHKBP1-218ENST00000598907 RNF186Q9NXI6 227 aa18.54■□□□□ 0.56
SHKBP1-218ENST00000598907 KNSTRNQ9Y448 316 aa18.54■□□□□ 0.56
SHKBP1-218ENST00000598907 FAM155AB1AL88 458 aaPredicted RBP18.53■□□□□ 0.56
SHKBP1-218ENST00000598907 HIRAP54198 1017 aaPredicted RBP18.53■□□□□ 0.56
SHKBP1-218ENST00000598907 CXCL9Q07325 125 aa18.53■□□□□ 0.56
SHKBP1-218ENST00000598907 CRY2Q49AN0 593 aa18.53■□□□□ 0.56
SHKBP1-218ENST00000598907 RGMBQ6NW40 437 aa18.53■□□□□ 0.56
SHKBP1-218ENST00000598907 USP48Q86UV5 1035 aa18.53■□□□□ 0.56
SHKBP1-218ENST00000598907 SHTN1A0MZ66 631 aa18.52■□□□□ 0.56
SHKBP1-218ENST00000598907 HLFQ16534 295 aa18.52■□□□□ 0.56
SHKBP1-218ENST00000598907 AKAP11Q9UKA4 1901 aa18.52■□□□□ 0.56
SHKBP1-218ENST00000598907 BTBD11A6QL63 1104 aa18.51■□□□□ 0.55
SHKBP1-218ENST00000598907 GNAT3A8MTJ3 354 aa18.51■□□□□ 0.55
SHKBP1-218ENST00000598907 HABP4Q5JVS0 413 aaKnown RBP18.51■□□□□ 0.55
SHKBP1-218ENST00000598907 PGAP2Q9UHJ9 254 aa18.51■□□□□ 0.55
SHKBP1-218ENST00000598907 ZNF157P51786 506 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-218ENST00000598907 ZNRF3Q9ULT6 936 aa18.5■□□□□ 0.55
SHKBP1-218ENST00000598907 RIC1Q4ADV7 1423 aa18.49■□□□□ 0.55
SHKBP1-218ENST00000598907 RAD17O75943 681 aa18.49■□□□□ 0.55
SHKBP1-218ENST00000598907 ZC3H15Q8WU90 426 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-218ENST00000598907 NBPF26B4DH59 902 aa18.48■□□□□ 0.55
SHKBP1-218ENST00000598907 GRIPAP1Q4V328 841 aa18.48■□□□□ 0.55
SHKBP1-218ENST00000598907 NBPF10Q6P3W6 841 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-218ENST00000598907 GBA2Q9HCG7 927 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-218ENST00000598907 DIAPH1O60610 1272 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-218ENST00000598907 C2orf69Q8N8R5 385 aa18.47■□□□□ 0.55
SHKBP1-218ENST00000598907 CCDC102AQ96A19 550 aa18.47■□□□□ 0.55
SHKBP1-218ENST00000598907 RBM17Q96I25 401 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-218ENST00000598907 NYXQ9GZU5 481 aa18.47■□□□□ 0.55
SHKBP1-218ENST00000598907 CDHR2Q9BYE9 1310 aa18.47■□□□□ 0.55
SHKBP1-218ENST00000598907 ADM5C9JUS6 153 aa18.46■□□□□ 0.55
SHKBP1-218ENST00000598907 HOXA10P31260 410 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-218ENST00000598907 NGEFQ8N5V2 710 aa18.46■□□□□ 0.55
SHKBP1-218ENST00000598907 GAS2L2Q8NHY3 880 aa18.46■□□□□ 0.55
SHKBP1-218ENST00000598907 TMX4Q9H1E5 349 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-218ENST00000598907 CNOT7Q9UIV1 285 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-218ENST00000598907 HDAC9Q9UKV0 1011 aa18.46■□□□□ 0.55
SHKBP1-218ENST00000598907 GPTP24298 496 aa18.45■□□□□ 0.54
SHKBP1-218ENST00000598907 C3orf67Q6ZVT6 689 aa18.45■□□□□ 0.54
SHKBP1-218ENST00000598907 KRT26Q7Z3Y9 468 aa18.45■□□□□ 0.54
SHKBP1-218ENST00000598907 MICALL2Q8IY33 904 aa18.45■□□□□ 0.54
SHKBP1-218ENST00000598907 CSRNP1Q96S65 589 aa18.45■□□□□ 0.54
SHKBP1-218ENST00000598907 CEMIPQ8WUJ3 1361 aa18.44■□□□□ 0.54
SHKBP1-218ENST00000598907 U2SURPO15042 1029 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-218ENST00000598907 SLC10A3P09131 477 aa18.44■□□□□ 0.54
SHKBP1-218ENST00000598907 SNRPA1P09661 255 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-218ENST00000598907 CC2D1BQ5T0F9 858 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-218ENST00000598907 CRAMP1Q96RY5 1269 aa18.44■□□□□ 0.54
SHKBP1-218ENST00000598907 PRKRIP1Q9H875 184 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-218ENST00000598907 H7C1D1 291 aa18.43■□□□□ 0.54
SHKBP1-218ENST00000598907 TNIP1Q15025 636 aa18.43■□□□□ 0.54
SHKBP1-218ENST00000598907 TBC1D10BQ4KMP7 808 aaPredicted RBP18.43■□□□□ 0.54
SHKBP1-218ENST00000598907 SAMD7Q7Z3H4 446 aa18.43■□□□□ 0.54
SHKBP1-218ENST00000598907 NUP98P52948 1817 aa18.42■□□□□ 0.54
SHKBP1-218ENST00000598907 RGL2O15211 777 aa18.42■□□□□ 0.54
SHKBP1-218ENST00000598907 RALBP1Q15311 655 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms