RNA–Protein interactions for RNA: ENST00000598159.6

SSBP4-205, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 747 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-205ENST00000598159 DICER1Q9UPY3 1922 aaKnown RBP29.9■■■□□ 2.38
SSBP4-205ENST00000598159 RIC1Q4ADV7 1423 aa29.9■■■□□ 2.38
SSBP4-205ENST00000598159 ANP32CO43423 234 aa29.9■■■□□ 2.38
SSBP4-205ENST00000598159 RTKN2Q8IZC4 609 aa29.9■■■□□ 2.38
SSBP4-205ENST00000598159 RBM46Q8TBY0 533 aaKnown RBP29.9■■■□□ 2.38
SSBP4-205ENST00000598159 UTP14AQ9BVJ6 771 aaKnown RBP29.9■■■□□ 2.38
SSBP4-205ENST00000598159 CHPF2Q9P2E5 772 aa29.9■■■□□ 2.38
SSBP4-205ENST00000598159 TCIRG1Q13488 830 aa29.89■■■□□ 2.38
SSBP4-205ENST00000598159 HOXA10P31260 410 aaPredicted RBP29.88■■■□□ 2.37
SSBP4-205ENST00000598159 SLC10A5Q5PT55 438 aa29.88■■■□□ 2.37
SSBP4-205ENST00000598159 RPGRQ92834 1020 aaKnown RBP29.88■■■□□ 2.37
SSBP4-205ENST00000598159 VEGFAP15692 232 aaPredicted RBP29.87■■■□□ 2.37
SSBP4-205ENST00000598159 NLRP3Q96P20 1036 aa29.87■■■□□ 2.37
SSBP4-205ENST00000598159 HYPKQ9NX55 129 aa29.87■■■□□ 2.37
SSBP4-205ENST00000598159 TNRC6CQ9HCJ0 1690 aaKnown RBP29.86■■■□□ 2.37
SSBP4-205ENST00000598159 FKBP4Q02790 459 aaKnown RBP eCLIP29.86■■■□□ 2.37
SSBP4-205ENST00000598159 RBM17Q96I25 401 aaKnown RBP29.86■■■□□ 2.37
SSBP4-205ENST00000598159 RNF123Q5XPI4 1314 aa29.86■■■□□ 2.37
SSBP4-205ENST00000598159 CC2D2BQ6DHV5 1058 aa29.85■■■□□ 2.37
SSBP4-205ENST00000598159 ANKRD13DQ6ZTN6 518 aa29.85■■■□□ 2.37
SSBP4-205ENST00000598159 PLBD2Q8NHP8 589 aa29.85■■■□□ 2.37
SSBP4-205ENST00000598159 CRAMP1Q96RY5 1269 aa29.85■■■□□ 2.37
SSBP4-205ENST00000598159 FSTL1Q12841 308 aa29.84■■■□□ 2.37
SSBP4-205ENST00000598159 NLRP10Q86W26 655 aa29.84■■■□□ 2.37
SSBP4-205ENST00000598159 TIAM2Q8IVF5 1701 aa29.84■■■□□ 2.37
SSBP4-205ENST00000598159 CHMP4AQ9BY43 222 aa29.83■■■□□ 2.37
SSBP4-205ENST00000598159 CCDC27Q2M243 656 aa29.82■■■□□ 2.36
SSBP4-205ENST00000598159 GRIPAP1Q4V328 841 aa29.82■■■□□ 2.36
SSBP4-205ENST00000598159 OLFM4Q6UX06 510 aa29.82■■■□□ 2.36
SSBP4-205ENST00000598159 MRS2Q9HD23 443 aa29.82■■■□□ 2.36
SSBP4-205ENST00000598159 ELL2O00472 640 aaPredicted RBP29.8■■■□□ 2.36
SSBP4-205ENST00000598159 APLP1P51693 650 aa29.8■■■□□ 2.36
SSBP4-205ENST00000598159 NCBP3Q53F19 620 aaKnown RBP29.8■■■□□ 2.36
SSBP4-205ENST00000598159 SYNE4Q8N205 404 aa29.8■■■□□ 2.36
SSBP4-205ENST00000598159 TRMT112Q9UI30 125 aaKnown RBP29.8■■■□□ 2.36
SSBP4-205ENST00000598159 ANKRD36CQ5JPF3 1778 aa29.8■■■□□ 2.36
SSBP4-205ENST00000598159 C3orf67Q6ZVT6 689 aa29.78■■■□□ 2.36
SSBP4-205ENST00000598159 PSMD1Q99460 953 aa29.78■■■□□ 2.36
SSBP4-205ENST00000598159 ZNF277Q9NRM2 450 aaPredicted RBP29.78■■■□□ 2.36
SSBP4-205ENST00000598159 SH3TC1Q8TE82 1336 aa29.77■■■□□ 2.36
SSBP4-205ENST00000598159 POTECB2RU33 542 aa29.77■■■□□ 2.36
SSBP4-205ENST00000598159 C8orf58Q8NAV2 365 aa29.77■■■□□ 2.36
SSBP4-205ENST00000598159 SMC1BQ8NDV3 1235 aa29.77■■■□□ 2.36
SSBP4-205ENST00000598159 IARSP41252 1262 aaKnown RBP29.76■■■□□ 2.35
SSBP4-205ENST00000598159 WWC1Q8IX03 1113 aa29.76■■■□□ 2.35
SSBP4-205ENST00000598159 ISCA1Q9BUE6 129 aa29.76■■■□□ 2.35
SSBP4-205ENST00000598159 TMX4Q9H1E5 349 aaPredicted RBP29.76■■■□□ 2.35
SSBP4-205ENST00000598159 WDR90Q96KV7 1748 aa29.76■■■□□ 2.35
SSBP4-205ENST00000598159 DDNO94850 711 aaPredicted RBP29.75■■■□□ 2.35
SSBP4-205ENST00000598159 PPEF1O14829 653 aaPredicted RBP29.74■■■□□ 2.35
SSBP4-205ENST00000598159 HCLS1P14317 486 aaPredicted RBP29.74■■■□□ 2.35
SSBP4-205ENST00000598159 CCDC30Q5VVM6 783 aa29.74■■■□□ 2.35
SSBP4-205ENST00000598159 BBOX1O75936 387 aa29.73■■■□□ 2.35
SSBP4-205ENST00000598159 TRIM28Q13263 835 aaKnown RBP29.73■■■□□ 2.35
SSBP4-205ENST00000598159 RIC3Q7Z5B4 369 aa29.73■■■□□ 2.35
SSBP4-205ENST00000598159 GOLGA2Q08379 1002 aa29.72■■■□□ 2.35
SSBP4-205ENST00000598159 PHAXQ9H814 394 aaKnown RBP29.72■■■□□ 2.35
SSBP4-205ENST00000598159 SNED1Q8TER0 1413 aa29.71■■■□□ 2.35
SSBP4-205ENST00000598159 ATP5J2-PTCD1G3V325 749 aa29.71■■■□□ 2.35
SSBP4-205ENST00000598159 IL16Q14005 1332 aa29.71■■■□□ 2.35
SSBP4-205ENST00000598159 TCERG1O14776 1098 aaKnown RBP29.7■■■□□ 2.35
SSBP4-205ENST00000598159 DDX46Q7L014 1031 aaKnown RBP29.7■■■□□ 2.35
SSBP4-205ENST00000598159 JDP2Q8WYK2 163 aa29.7■■■□□ 2.35
SSBP4-205ENST00000598159 ATP6V0A2Q9Y487 856 aa29.7■■■□□ 2.35
SSBP4-205ENST00000598159 FZD9O00144 591 aa29.69■■■□□ 2.34
SSBP4-205ENST00000598159 TSPYL6Q8N831 410 aa29.69■■■□□ 2.34
SSBP4-205ENST00000598159 ABCC4O15439 1325 aa29.69■■■□□ 2.34
SSBP4-205ENST00000598159 TSR2Q969E8 191 aaKnown RBP29.68■■■□□ 2.34
SSBP4-205ENST00000598159 FAM89AQ96GI7 184 aa29.68■■■□□ 2.34
SSBP4-205ENST00000598159 L3MBTL3Q96JM7 780 aaPredicted RBP29.68■■■□□ 2.34
SSBP4-205ENST00000598159 IQCA1LA6NCM1 817 aa29.67■■■□□ 2.34
SSBP4-205ENST00000598159 SP8Q8IXZ3 490 aa29.67■■■□□ 2.34
SSBP4-205ENST00000598159 VPS33BQ9H267 617 aa29.67■■■□□ 2.34
SSBP4-205ENST00000598159 DDX58O95786 925 aaKnown RBP29.66■■■□□ 2.34
SSBP4-205ENST00000598159 LAMB2P55268 1798 aa29.66■■■□□ 2.34
SSBP4-205ENST00000598159 CEP350Q5VT06 3117 aa29.65■■■□□ 2.34
SSBP4-205ENST00000598159 GRAPQ13588 217 aa29.65■■■□□ 2.34
SSBP4-205ENST00000598159 GRAPLQ8TC17 118 aaPredicted RBP29.65■■■□□ 2.34
SSBP4-205ENST00000598159 ZNF428Q96B54 188 aa29.65■■■□□ 2.34
SSBP4-205ENST00000598159 SF3B3Q15393 1217 aaKnown RBP29.64■■■□□ 2.34
SSBP4-205ENST00000598159 WDR63Q8IWG1 891 aa29.64■■■□□ 2.34
SSBP4-205ENST00000598159 DNAJC5GQ8N7S2 189 aa29.64■■■□□ 2.34
SSBP4-205ENST00000598159 ZNF541Q9H0D2 1346 aa29.64■■■□□ 2.34
SSBP4-205ENST00000598159 TWISTNBQ3B726 338 aaPredicted RBP29.63■■■□□ 2.33
SSBP4-205ENST00000598159 TMC4Q7Z404 712 aa29.63■■■□□ 2.33
SSBP4-205ENST00000598159 LARGE2Q8N3Y3 721 aa29.63■■■□□ 2.33
SSBP4-205ENST00000598159 SUPT20HQ8NEM7 779 aa29.63■■■□□ 2.33
SSBP4-205ENST00000598159 STK31Q9BXU1 1019 aa29.63■■■□□ 2.33
SSBP4-205ENST00000598159 SCN4AP35499 1836 aa29.62■■■□□ 2.33
SSBP4-205ENST00000598159 HSP90B1P14625 803 aaKnown RBP29.62■■■□□ 2.33
SSBP4-205ENST00000598159 EIF6P56537 245 aaKnown RBP29.62■■■□□ 2.33
SSBP4-205ENST00000598159 GPC2Q8N158 579 aa29.62■■■□□ 2.33
SSBP4-205ENST00000598159 ZBTB38Q8NAP3 1195 aaPredicted RBP29.62■■■□□ 2.33
SSBP4-205ENST00000598159 CCDC191Q8NCU4 936 aa29.62■■■□□ 2.33
SSBP4-205ENST00000598159 MYD88Q99836 296 aa29.62■■■□□ 2.33
SSBP4-205ENST00000598159 IRS4O14654 1257 aaPredicted RBP29.61■■■□□ 2.33
SSBP4-205ENST00000598159 METTL22Q9BUU2 404 aaPredicted RBP29.61■■■□□ 2.33
SSBP4-205ENST00000598159 RTFDC1Q9BY42 306 aaPredicted RBP29.61■■■□□ 2.33
SSBP4-205ENST00000598159 RTL5Q5HYW3 569 aaPredicted RBP29.6■■■□□ 2.33
SSBP4-205ENST00000598159 MPNDQ8N594 471 aa29.6■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms