RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 TRIM28Q13263 835 aaKnown RBP24.99■■□□□ 1.59
LSM4-203ENST00000593829 NUTM1Q86Y26 1132 aa24.99■■□□□ 1.59
LSM4-203ENST00000593829 MYD88Q99836 296 aa24.99■■□□□ 1.59
LSM4-203ENST00000593829 PDZRN3Q9UPQ7 1066 aa24.99■■□□□ 1.59
LSM4-203ENST00000593829 N4BP2Q86UW6 1770 aaPredicted RBP24.99■■□□□ 1.59
LSM4-203ENST00000593829 KCNA3P22001 575 aa24.98■■□□□ 1.59
LSM4-203ENST00000593829 ERFEQ4G0M1 354 aa24.98■■□□□ 1.59
LSM4-203ENST00000593829 SSH1Q8WYL5 1049 aa24.98■■□□□ 1.59
LSM4-203ENST00000593829 H0YIN7 160 aa24.98■■□□□ 1.59
LSM4-203ENST00000593829 GPR162Q16538 588 aa24.98■■□□□ 1.59
LSM4-203ENST00000593829 ALDH1L2Q3SY69 923 aa24.98■■□□□ 1.59
LSM4-203ENST00000593829 C2CD5Q86YS7 1000 aa24.98■■□□□ 1.59
LSM4-203ENST00000593829 RNF123Q5XPI4 1314 aa24.97■■□□□ 1.59
LSM4-203ENST00000593829 MRPL50Q8N5N7 158 aaKnown RBP24.97■■□□□ 1.59
LSM4-203ENST00000593829 ANKRD31Q8N7Z5 1873 aa24.97■■□□□ 1.59
LSM4-203ENST00000593829 TRMT112Q9UI30 125 aaKnown RBP24.96■■□□□ 1.59
LSM4-203ENST00000593829 NEXNQ0ZGT2 675 aa24.96■■□□□ 1.59
LSM4-203ENST00000593829 PIM2Q9P1W9 311 aa24.96■■□□□ 1.59
LSM4-203ENST00000593829 WWC3Q9ULE0 1092 aa24.96■■□□□ 1.59
LSM4-203ENST00000593829 ABCC12Q96J65 1359 aa24.95■■□□□ 1.58
LSM4-203ENST00000593829 DNAAF4Q8WXU2 420 aa24.94■■□□□ 1.58
LSM4-203ENST00000593829 CCDC191Q8NCU4 936 aa24.94■■□□□ 1.58
LSM4-203ENST00000593829 BCL2L13Q9BXK5 485 aa24.94■■□□□ 1.58
LSM4-203ENST00000593829 SMC4Q9NTJ3 1288 aa24.94■■□□□ 1.58
LSM4-203ENST00000593829 SH3TC1Q8TE82 1336 aa24.93■■□□□ 1.58
LSM4-203ENST00000593829 KLRG2A4D1S0 409 aaPredicted RBP24.93■■□□□ 1.58
LSM4-203ENST00000593829 RIC1Q4ADV7 1423 aa24.93■■□□□ 1.58
LSM4-203ENST00000593829 YBX3P16989 372 aaKnown RBP eCLIP24.92■■□□□ 1.581e-10■■■□□ 15.9
LSM4-203ENST00000593829 CWC25Q9NXE8 425 aaPredicted RBP24.92■■□□□ 1.58
LSM4-203ENST00000593829 SLC10A5Q5PT55 438 aa24.92■■□□□ 1.58
LSM4-203ENST00000593829 BCS1LQ9Y276 419 aa24.92■■□□□ 1.58
LSM4-203ENST00000593829 IGKV5-2P06315 115 aa24.91■■□□□ 1.58
LSM4-203ENST00000593829 SRGNP10124 158 aa24.91■■□□□ 1.58
LSM4-203ENST00000593829 DALRD3Q5D0E6 543 aaKnown RBP24.91■■□□□ 1.58
LSM4-203ENST00000593829 F6X3S4 739 aa24.9■■□□□ 1.58
LSM4-203ENST00000593829 RARSP54136 660 aaKnown RBP24.9■■□□□ 1.58
LSM4-203ENST00000593829 ZNF622Q969S3 477 aaKnown RBP eCLIP24.9■■□□□ 1.58
LSM4-203ENST00000593829 PTPRCP08575 1304 aa24.9■■□□□ 1.58
LSM4-203ENST00000593829 SYNE4Q8N205 404 aa24.9■■□□□ 1.58
LSM4-203ENST00000593829 FAM89AQ96GI7 184 aa24.9■■□□□ 1.58
LSM4-203ENST00000593829 MASTLQ96GX5 879 aa24.9■■□□□ 1.58
LSM4-203ENST00000593829 GOLGB1Q14789 3259 aaKnown RBP24.9■■□□□ 1.58
LSM4-203ENST00000593829 BRCA1P38398 1863 aaKnown RBP24.89■■□□□ 1.58
LSM4-203ENST00000593829 GRIN3BO60391 1043 aa24.89■■□□□ 1.58
LSM4-203ENST00000593829 STYK1Q6J9G0 422 aa24.89■■□□□ 1.58
LSM4-203ENST00000593829 TTLL6Q8N841 843 aa24.89■■□□□ 1.58
LSM4-203ENST00000593829 ZBTB38Q8NAP3 1195 aaPredicted RBP24.89■■□□□ 1.58
LSM4-203ENST00000593829 NLRP3Q96P20 1036 aa24.89■■□□□ 1.58
LSM4-203ENST00000593829 DLEC1Q9Y238 1755 aa24.89■■□□□ 1.57
LSM4-203ENST00000593829 NEURL1BA8MQ27 555 aa24.88■■□□□ 1.57
LSM4-203ENST00000593829 CWF19L2Q2TBE0 894 aaKnown RBP24.88■■□□□ 1.57
LSM4-203ENST00000593829 LINS1Q8NG48 757 aa24.88■■□□□ 1.57
LSM4-203ENST00000593829 COL11A2P13942 1736 aaPredicted RBP24.88■■□□□ 1.57
LSM4-203ENST00000593829 HCLS1P14317 486 aaPredicted RBP24.88■■□□□ 1.57
LSM4-203ENST00000593829 NPR1P16066 1061 aa24.88■■□□□ 1.57
LSM4-203ENST00000593829 BRPF1P55201 1214 aaPredicted RBP24.88■■□□□ 1.57
LSM4-203ENST00000593829 CRY2Q49AN0 593 aa24.88■■□□□ 1.57
LSM4-203ENST00000593829 TNRC6CQ9HCJ0 1690 aaKnown RBP24.88■■□□□ 1.57
LSM4-203ENST00000593829 RTL5Q5HYW3 569 aaPredicted RBP24.87■■□□□ 1.57
LSM4-203ENST00000593829 CNKSR1Q969H4 720 aa24.87■■□□□ 1.57
LSM4-203ENST00000593829 PPP4R2Q9NY27 417 aa24.87■■□□□ 1.57
LSM4-203ENST00000593829 PCCAP05165 728 aaPredicted RBP24.86■■□□□ 1.57
LSM4-203ENST00000593829 BEND3Q5T5X7 828 aa24.85■■□□□ 1.57
LSM4-203ENST00000593829 RPGRQ92834 1020 aaKnown RBP24.85■■□□□ 1.57
LSM4-203ENST00000593829 IRS4O14654 1257 aaPredicted RBP24.84■■□□□ 1.57
LSM4-203ENST00000593829 HSP90B1P14625 803 aaKnown RBP24.84■■□□□ 1.57
LSM4-203ENST00000593829 GCKRQ14397 625 aa24.84■■□□□ 1.57
LSM4-203ENST00000593829 SLC4A10Q6U841 1118 aa24.84■■□□□ 1.57
LSM4-203ENST00000593829 C3orf67Q6ZVT6 689 aa24.84■■□□□ 1.57
LSM4-203ENST00000593829 ALDH1B1P30837 517 aa24.83■■□□□ 1.57
LSM4-203ENST00000593829 NOB1Q9ULX3 412 aaKnown RBP24.83■■□□□ 1.57
LSM4-203ENST00000593829 HOXA10P31260 410 aaPredicted RBP24.82■■□□□ 1.56
LSM4-203ENST00000593829 KIF16BQ96L93 1317 aa24.82■■□□□ 1.56
LSM4-203ENST00000593829 JARID2Q92833 1246 aaPredicted RBP24.82■■□□□ 1.56
LSM4-203ENST00000593829 PRPF40BQ6NWY9 871 aaKnown RBP24.81■■□□□ 1.56
LSM4-203ENST00000593829 RBM17Q96I25 401 aaKnown RBP24.81■■□□□ 1.56
LSM4-203ENST00000593829 SRCIN1Q9C0H9 1055 aa24.81■■□□□ 1.56
LSM4-203ENST00000593829 CDHR2Q9BYE9 1310 aa24.81■■□□□ 1.56
LSM4-203ENST00000593829 H7C1W4 665 aa24.8■■□□□ 1.56
LSM4-203ENST00000593829 ALDH1L1O75891 902 aa24.8■■□□□ 1.56
LSM4-203ENST00000593829 UTRNP46939 3433 aa24.8■■□□□ 1.56
LSM4-203ENST00000593829 ARFGEF1Q9Y6D6 1849 aa24.8■■□□□ 1.56
LSM4-203ENST00000593829 BCAR3O75815 825 aa24.8■■□□□ 1.56
LSM4-203ENST00000593829 DDX60Q8IY21 1712 aaKnown RBP24.8■■□□□ 1.56
LSM4-203ENST00000593829 UBE3BQ7Z3V4 1068 aa24.79■■□□□ 1.56
LSM4-203ENST00000593829 CRAMP1Q96RY5 1269 aa24.79■■□□□ 1.56
LSM4-203ENST00000593829 API5Q9BZZ5 524 aaKnown RBP24.79■■□□□ 1.56
LSM4-203ENST00000593829 BCL11AQ9H165 835 aa24.79■■□□□ 1.56
LSM4-203ENST00000593829 SF3B3Q15393 1217 aaKnown RBP24.78■■□□□ 1.56
LSM4-203ENST00000593829 ARHGAP45Q92619 1136 aa24.78■■□□□ 1.56
LSM4-203ENST00000593829 PDE8AO60658 829 aa24.78■■□□□ 1.56
LSM4-203ENST00000593829 ARHGAP27Q6ZUM4 889 aa24.78■■□□□ 1.56
LSM4-203ENST00000593829 IPO8O15397 1037 aaKnown RBP24.77■■□□□ 1.56
LSM4-203ENST00000593829 LAMB2P55268 1798 aa24.77■■□□□ 1.56
LSM4-203ENST00000593829 C21orf2O43822 256 aa24.76■■□□□ 1.55
LSM4-203ENST00000593829 DDX46Q7L014 1031 aaKnown RBP24.76■■□□□ 1.55
LSM4-203ENST00000593829 ZNF219Q9P2Y4 722 aaPredicted RBP24.76■■□□□ 1.55
LSM4-203ENST00000593829 SLX4Q8IY92 1834 aa24.76■■□□□ 1.55
LSM4-203ENST00000593829 CASP7P55210 303 aa24.75■■□□□ 1.55
LSM4-203ENST00000593829 C9orf78Q9NZ63 289 aaPredicted RBP24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms