RNA–Protein interactions for RNA: ENST00000592991.1

LDLRAD4-218, Transcript of low density lipoprotein receptor class A domain containing 4, human

TSL 1 (best) BASIC

Gene LDLRAD4, Length 1,640 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDLRAD4-218	ENST00000592991	BCL2L12	Q9HB09	334 aa		31.97	■■■□□ 2.71
LDLRAD4-218	ENST00000592991	ATP8B2	P98198	1209 aa		31.97	■■■□□ 2.71
LDLRAD4-218	ENST00000592991	BICC1	Q9H694	974 aa	Known RBP	31.97	■■■□□ 2.71
LDLRAD4-218	ENST00000592991	NARF	Q9UHQ1	456 aa		31.97	■■■□□ 2.71
LDLRAD4-218	ENST00000592991	TUBGCP6	Q96RT7	1819 aa		31.96	■■■□□ 2.71
LDLRAD4-218	ENST00000592991	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	31.96	■■■□□ 2.71
LDLRAD4-218	ENST00000592991	TRAPPC3L	Q5T215	181 aa		31.96	■■■□□ 2.71
LDLRAD4-218	ENST00000592991	PPP1R42	Q7Z4L9	355 aa		31.95	■■■□□ 2.71
LDLRAD4-218	ENST00000592991	CAMKK2	Q96RR4	588 aa		31.94	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	FAM177B	A6PVY3	158 aa		31.93	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	DEFB132	Q7Z7B7	95 aa		31.93	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	SMC5	Q8IY18	1101 aa		31.93	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	SYNE4	Q8N205	404 aa		31.93	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	FAM89A	Q96GI7	184 aa		31.93	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	NIP7	Q9Y221	180 aa	Known RBP eCLIP	31.93	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	ZNF652	Q9Y2D9	606 aa		31.93	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	ZPR1	O75312	459 aa		31.93	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	RFC4	P35249	363 aa		31.92	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	AKT1S1	Q96B36	256 aa		31.92	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	USP42	Q9H9J4	1324 aa	Known RBP	31.91	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	SRGAP3	O43295	1099 aa		31.91	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	HMMR	O75330	724 aa		31.91	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	SF3B2	Q13435	895 aa	Known RBP	31.91	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	SUSD4	Q5VX71	490 aa		31.91	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	PCCA	P05165	728 aa	Predicted RBP	31.9	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	TBC1D9B	Q66K14	1250 aa		31.9	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	BICDL1	Q6ZP65	573 aa		31.9	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	PDZRN3	Q9UPQ7	1066 aa		31.9	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	HDAC5	Q9UQL6	1122 aa		31.9	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	CLEC4G	Q6UXB4	293 aa		31.89	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	31.89	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	ADRA2B	P18089	450 aa		31.89	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	SSFA2	P28290	1259 aa		31.89	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	DCTPP1	Q9H773	170 aa		31.89	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	TFCP2L1	Q9NZI6	479 aa		31.89	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	TRMT112	Q9UI30	125 aa	Known RBP	31.89	■■■□□ 2.7
LDLRAD4-218	ENST00000592991	POLA2	Q14181	598 aa		31.88	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	SSH3	Q8TE77	659 aa		31.88	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	MTX1	Q13505	466 aa		31.87	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	BAG6	P46379	1132 aa		31.86	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	FOXO4	P98177	505 aa		31.86	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	GCC1	Q96CN9	775 aa		31.86	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	ANO8	Q9HCE9	1232 aa	Predicted RBP	31.86	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	EXOC6B	Q9Y2D4	811 aa		31.86	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	APBB1	O00213	710 aa		31.86	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	PARP10	Q53GL7	1025 aa		31.85	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	COL24A1	Q17RW2	1714 aa		31.83	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	RABL6	Q3YEC7	729 aa	Predicted RBP	31.83	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	LMBR1L	Q6UX01	489 aa		31.83	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	UTP14A	Q9BVJ6	771 aa	Known RBP	31.83	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	NTSR2	O95665	410 aa		31.82	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	ANKRD45	Q5TZF3	282 aa		31.82	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	PA2G4	Q9UQ80	394 aa	Known RBP	31.82	■■■□□ 2.69
LDLRAD4-218	ENST00000592991	CDHR2	Q9BYE9	1310 aa		31.82	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	RGL2	O15211	777 aa		31.82	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	HMGB2	P26583	209 aa	Known RBP	31.82	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	RGS3	P49796	1198 aa		31.82	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	NUTM1	Q86Y26	1132 aa		31.82	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	BCL11A	Q9H165	835 aa		31.82	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	CHMP3	Q9Y3E7	222 aa		31.82	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	IRS4	O14654	1257 aa	Predicted RBP	31.81	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	NUCB1	Q02818	461 aa		31.81	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	LNPK	Q9C0E8	428 aa		31.81	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	DDX60	Q8IY21	1712 aa	Known RBP	31.8	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	GYS1	P13807	737 aa		31.8	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	COL23A1	Q86Y22	540 aa	Predicted RBP	31.8	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	KLHDC4	Q8TBB5	520 aa		31.8	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	MYH3	P11055	1940 aa		31.8	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	SH3TC1	Q8TE82	1336 aa		31.79	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	CCDC85A	Q96PX6	553 aa	Predicted RBP	31.79	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	SMARCA5	O60264	1052 aa	Predicted RBP	31.78	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	SURF6	O75683	361 aa	Known RBP	31.78	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	HCLS1	P14317	486 aa	Predicted RBP	31.78	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	SETDB2	Q96T68	719 aa		31.78	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	PNPLA7	Q6ZV29	1317 aa		31.78	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	MSH5	O43196	834 aa		31.78	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	PLA2G12B	Q9BX93	195 aa		31.78	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	PDE4A	P27815	886 aa		31.77	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	NFIX	Q14938	502 aa		31.77	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	CHD1L	Q86WJ1	897 aa		31.77	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	LAMB2	P55268	1798 aa		31.76	■■■□□ 2.68
LDLRAD4-218	ENST00000592991	RFX5	P48382	616 aa	Predicted RBP	31.76	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	ERFE	Q4G0M1	354 aa		31.75	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	SLC15A2	Q16348	729 aa		31.74	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	FAM161A	Q3B820	660 aa		31.74	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	SIL1	Q9H173	461 aa		31.74	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	STK32B	Q9NY57	414 aa		31.74	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	CTSW	P56202	376 aa		31.73	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	CCDC24	Q8N4L8	307 aa		31.73	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	ABCC12	Q96J65	1359 aa		31.73	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	CASZ1	Q86V15	1759 aa		31.72	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	PDE8A	O60658	829 aa		31.72	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	NBPF5P	Q86XG9	351 aa	Predicted RBP	31.72	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	NOP58	Q9Y2X3	529 aa	Known RBP	31.71	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	CSF1R	P07333	972 aa		31.71	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	PTPN12	Q05209	780 aa	Known RBP	31.71	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	TTLL11	Q8NHH1	800 aa		31.71	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	CARMIL3	Q8ND23	1372 aa		31.7	■■■□□ 2.67
LDLRAD4-218	ENST00000592991	OS9	Q13438	667 aa	Predicted RBP	31.7	■■■□□ 2.66
LDLRAD4-218	ENST00000592991	CCDC125	Q86Z20	511 aa		31.7	■■■□□ 2.66

Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms