RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 PSMA5P28066 241 aa17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 NECAB1Q8N987 351 aa17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 FAM200AQ8TCP9 573 aa17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 PDCP20941 246 aa17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 LMO7Q8WWI1 1683 aa17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 ANXA1P04083 346 aa17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 PLCB2Q00722 1185 aa17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 JARID2Q92833 1246 aaPredicted RBP17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 C9orf78Q9NZ63 289 aaPredicted RBP17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 ZBTB7CA1YPR0 619 aa17.67■□□□□ 0.42
SMARCA4-219ENST00000592604 MAP3K11Q16584 847 aa17.67■□□□□ 0.42
SMARCA4-219ENST00000592604 PYCARDQ9ULZ3 195 aa17.67■□□□□ 0.42
SMARCA4-219ENST00000592604 BRD2P25440 801 aaKnown RBP17.67■□□□□ 0.42
SMARCA4-219ENST00000592604 NBPF6Q5VWK0 638 aa17.67■□□□□ 0.42
SMARCA4-219ENST00000592604 NBPF4Q96M43 638 aa17.67■□□□□ 0.42
SMARCA4-219ENST00000592604 PA2G4Q9UQ80 394 aaKnown RBP17.67■□□□□ 0.42
SMARCA4-219ENST00000592604 BTBD11A6QL63 1104 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 SLC27A2O14975 620 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 KSR2Q6VAB6 950 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 AACSQ86V21 672 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 NUP62CLQ9H1M0 184 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 MAP3K2Q9Y2U5 619 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 DTNBO60941 627 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 ANKRD1Q15327 319 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 AKAP4Q5JQC9 854 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 CDC37L1Q7L3B6 337 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 TSC1Q92574 1164 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 MRVI1Q9Y6F6 885 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 ADGRL3Q9HAR2 1447 aa17.66■□□□□ 0.42
SMARCA4-219ENST00000592604 TEFQ10587 303 aa17.65■□□□□ 0.42
SMARCA4-219ENST00000592604 NMIQ13287 307 aaPredicted RBP17.65■□□□□ 0.42
SMARCA4-219ENST00000592604 PLPPR3Q6T4P5 718 aa17.65■□□□□ 0.42
SMARCA4-219ENST00000592604 FAM227BQ96M60 508 aa17.65■□□□□ 0.42
SMARCA4-219ENST00000592604 LIG1P18858 919 aa17.65■□□□□ 0.42
SMARCA4-219ENST00000592604 TYRO3Q06418 890 aa17.65■□□□□ 0.42
SMARCA4-219ENST00000592604 SCAND2PQ9GZW5 306 aaPredicted RBP17.65■□□□□ 0.42
SMARCA4-219ENST00000592604 SASH1O94885 1247 aa17.65■□□□□ 0.42
SMARCA4-219ENST00000592604 DDX54Q8TDD1 881 aaKnown RBP17.65■□□□□ 0.42
SMARCA4-219ENST00000592604 UTYO14607 1347 aa17.64■□□□□ 0.41
SMARCA4-219ENST00000592604 KCNJ4P48050 445 aa17.64■□□□□ 0.41
SMARCA4-219ENST00000592604 RBM43Q6ZSC3 357 aaKnown RBP17.64■□□□□ 0.41
SMARCA4-219ENST00000592604 NPHP4O75161 1426 aaPredicted RBP17.64■□□□□ 0.41
SMARCA4-219ENST00000592604 HEG1Q9ULI3 1381 aa17.64■□□□□ 0.41
SMARCA4-219ENST00000592604 TSGA10IPQ3SY00 556 aa17.64■□□□□ 0.41
SMARCA4-219ENST00000592604 RNF20Q5VTR2 975 aa17.64■□□□□ 0.41
SMARCA4-219ENST00000592604 EAF2Q96CJ1 260 aaPredicted RBP17.64■□□□□ 0.41
SMARCA4-219ENST00000592604 BLOC1S2Q6QNY1 142 aa17.63■□□□□ 0.41
SMARCA4-219ENST00000592604 SPC24Q8NBT2 197 aa17.63■□□□□ 0.41
SMARCA4-219ENST00000592604 BCL2L12Q9HB09 334 aa17.63■□□□□ 0.41
SMARCA4-219ENST00000592604 NFAT5O94916 1531 aa17.63■□□□□ 0.41
SMARCA4-219ENST00000592604 RPS6KB1P23443 525 aa17.63■□□□□ 0.41
SMARCA4-219ENST00000592604 JCADQ9P266 1359 aa17.63■□□□□ 0.41
SMARCA4-219ENST00000592604 NPHP3Q7Z494 1330 aa17.63■□□□□ 0.41
SMARCA4-219ENST00000592604 GIGYF1O75420 1035 aaPredicted RBP17.62■□□□□ 0.41
SMARCA4-219ENST00000592604 COL9A3Q14050 684 aaPredicted RBP17.62■□□□□ 0.41
SMARCA4-219ENST00000592604 FERMT3Q86UX7 667 aa17.62■□□□□ 0.41
SMARCA4-219ENST00000592604 KAZALD1Q96I82 304 aa17.62■□□□□ 0.41
SMARCA4-219ENST00000592604 DDX19AQ9NUU7 478 aaKnown RBP17.62■□□□□ 0.41
SMARCA4-219ENST00000592604 MED23Q9ULK4 1368 aa17.62■□□□□ 0.41
SMARCA4-219ENST00000592604 SETD1BQ9UPS6 1966 aaKnown RBP17.62■□□□□ 0.41
SMARCA4-219ENST00000592604 KIF13AQ9H1H9 1805 aa17.62■□□□□ 0.41
SMARCA4-219ENST00000592604 CHAF1AQ13111 956 aaPredicted RBP17.62■□□□□ 0.41
SMARCA4-219ENST00000592604 G3BP1Q13283 466 aaKnown RBP eCLIP17.61■□□□□ 0.412e-9■■■□□ 18.1
SMARCA4-219ENST00000592604 TOB2Q14106 344 aaPredicted RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 CWF19L2Q2TBE0 894 aaKnown RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 PLEKHO1Q53GL0 409 aaPredicted RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 FAM173BQ6P4H8 233 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 ZNF530Q6P9A1 599 aaPredicted RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 LINS1Q8NG48 757 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 ARID3AQ99856 593 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 HMG20BQ9P0W2 317 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 A0A0D9SFI3 127 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 GRM8O00222 908 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 CEBPAP49715 358 aaPredicted RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 PROSER3Q2NL68 480 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 IPO4Q8TEX9 1081 aaKnown RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 TNMDQ9H2S6 317 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 DACT1Q9NYF0 836 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 OVOS2A0A0G2JMS6 1433 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 RIOK3O14730 519 aaKnown RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 RNMTO43148 476 aaKnown RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 CTIFO43310 598 aaKnown RBP17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 CAMK4Q16566 473 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 LUZP1Q86V48 1076 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 SUCLG2Q96I99 432 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 NCAPD2Q15021 1401 aa17.61■□□□□ 0.41
SMARCA4-219ENST00000592604 RGPD2P0DJD1 1756 aa17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 MPRIPQ6WCQ1 1025 aa17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 LEO1Q8WVC0 666 aaPredicted RBP17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 SPATA32Q96LK8 384 aa17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 CCDC8Q9H0W5 538 aaPredicted RBP17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 CLSTN2Q9H4D0 955 aa17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 CBX8Q9HC52 389 aa17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 PTGS1P23219 599 aa17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 AMOTQ4VCS5 1084 aa17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 LARP1Q6PKG0 1096 aaKnown RBP17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 PHRF1Q9P1Y6 1649 aaKnown RBP17.6■□□□□ 0.41
SMARCA4-219ENST00000592604 KCNA6P17658 529 aa17.59■□□□□ 0.41
SMARCA4-219ENST00000592604 ANO6Q4KMQ2 910 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms