RNA–Protein interactions for RNA: ENST00000590830.5

MBD3-208, Transcript of methyl-CpG binding domain protein 3, humanhuman

TSL 1 (best)

Gene MBD3, Length 1,035 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3-208ENST00000590830 RASSF7Q02833 373 aa28.83■■■□□ 2.21
MBD3-208ENST00000590830 SLC10A5Q5PT55 438 aa28.83■■■□□ 2.21
MBD3-208ENST00000590830 C9orf131Q5VYM1 1079 aa28.83■■■□□ 2.21
MBD3-208ENST00000590830 C7orf43Q8WVR3 580 aa28.83■■■□□ 2.21
MBD3-208ENST00000590830 ZNF428Q96B54 188 aa28.83■■■□□ 2.21
MBD3-208ENST00000590830 ISCA1Q9BUE6 129 aa28.83■■■□□ 2.21
MBD3-208ENST00000590830 EXOSC9Q06265 439 aaKnown RBP28.82■■■□□ 2.2
MBD3-208ENST00000590830 TNRC6CQ9HCJ0 1690 aaKnown RBP28.81■■■□□ 2.2
MBD3-208ENST00000590830 ATP5J2-PTCD1G3V325 749 aa28.81■■■□□ 2.2
MBD3-208ENST00000590830 NFKBIEO00221 500 aa28.81■■■□□ 2.2
MBD3-208ENST00000590830 VAMP4O75379 141 aa28.81■■■□□ 2.2
MBD3-208ENST00000590830 GOLGA2Q08379 1002 aa28.81■■■□□ 2.2
MBD3-208ENST00000590830 CHMP4AQ9BY43 222 aa28.81■■■□□ 2.2
MBD3-208ENST00000590830 RIC1Q4ADV7 1423 aa28.8■■■□□ 2.2
MBD3-208ENST00000590830 SLX4Q8IY92 1834 aa28.8■■■□□ 2.2
MBD3-208ENST00000590830 DIEXFQ68CQ4 756 aaKnown RBP28.79■■■□□ 2.2
MBD3-208ENST00000590830 G2E3Q7L622 706 aa28.79■■■□□ 2.2
MBD3-208ENST00000590830 RIC3Q7Z5B4 369 aa28.79■■■□□ 2.2
MBD3-208ENST00000590830 TRIM28Q13263 835 aaKnown RBP28.78■■■□□ 2.2
MBD3-208ENST00000590830 TRMT112Q9UI30 125 aaKnown RBP28.78■■■□□ 2.2
MBD3-208ENST00000590830 HCLS1P14317 486 aaPredicted RBP28.77■■■□□ 2.2
MBD3-208ENST00000590830 HOXA10P31260 410 aaPredicted RBP28.77■■■□□ 2.2
MBD3-208ENST00000590830 MIER1Q8N108 512 aa28.77■■■□□ 2.2
MBD3-208ENST00000590830 RNF181Q9P0P0 153 aa28.77■■■□□ 2.2
MBD3-208ENST00000590830 SLC4A2P04920 1241 aa28.76■■■□□ 2.19
MBD3-208ENST00000590830 OLFM4Q6UX06 510 aa28.76■■■□□ 2.19
MBD3-208ENST00000590830 ZNF526Q8TF50 670 aaPredicted RBP28.76■■■□□ 2.19
MBD3-208ENST00000590830 STK31Q9BXU1 1019 aa28.76■■■□□ 2.19
MBD3-208ENST00000590830 MYH16Q9H6N6 1097 aa28.76■■■□□ 2.19
MBD3-208ENST00000590830 ANKRD36CQ5JPF3 1778 aa28.75■■■□□ 2.19
MBD3-208ENST00000590830 RNF123Q5XPI4 1314 aa28.75■■■□□ 2.19
MBD3-208ENST00000590830 ALDH1B1P30837 517 aa28.75■■■□□ 2.19
MBD3-208ENST00000590830 NLRP3Q96P20 1036 aa28.75■■■□□ 2.19
MBD3-208ENST00000590830 SH3TC1Q8TE82 1336 aa28.74■■■□□ 2.19
MBD3-208ENST00000590830 MYD88Q99836 296 aa28.74■■■□□ 2.19
MBD3-208ENST00000590830 LMNB1P20700 586 aa28.73■■■□□ 2.19
MBD3-208ENST00000590830 RPGRQ92834 1020 aaKnown RBP28.73■■■□□ 2.19
MBD3-208ENST00000590830 FAM89AQ96GI7 184 aa28.73■■■□□ 2.19
MBD3-208ENST00000590830 KSR2Q6VAB6 950 aa28.72■■■□□ 2.19
MBD3-208ENST00000590830 METTL22Q9BUU2 404 aaPredicted RBP28.72■■■□□ 2.19
MBD3-208ENST00000590830 MAP3K2Q9Y2U5 619 aa28.72■■■□□ 2.19
MBD3-208ENST00000590830 PI4KAP2A4QPH2 592 aa28.71■■■□□ 2.19
MBD3-208ENST00000590830 DDX58O95786 925 aaKnown RBP28.71■■■□□ 2.19
MBD3-208ENST00000590830 SLC51AQ86UW1 340 aa28.71■■■□□ 2.19
MBD3-208ENST00000590830 PI4KAP1Q8N8J0 262 aa28.71■■■□□ 2.19
MBD3-208ENST00000590830 RBM17Q96I25 401 aaKnown RBP28.71■■■□□ 2.19
MBD3-208ENST00000590830 CRAMP1Q96RY5 1269 aa28.71■■■□□ 2.19
MBD3-208ENST00000590830 SBF1O95248 1867 aa28.71■■■□□ 2.19
MBD3-208ENST00000590830 ARFGEF2Q9Y6D5 1785 aa28.7■■■□□ 2.19
MBD3-208ENST00000590830 SOGA3Q5TF21 947 aa28.7■■■□□ 2.18
MBD3-208ENST00000590830 GPBP1L1Q9HC44 474 aaPredicted RBP28.7■■■□□ 2.18
MBD3-208ENST00000590830 RTL5Q5HYW3 569 aaPredicted RBP28.69■■■□□ 2.18
MBD3-208ENST00000590830 LTBP3Q9NS15 1303 aa28.69■■■□□ 2.18
MBD3-208ENST00000590830 CACNA1SQ13698 1873 aa28.68■■■□□ 2.18
MBD3-208ENST00000590830 CCDC93Q567U6 631 aa28.68■■■□□ 2.18
MBD3-208ENST00000590830 TAOK3Q9H2K8 898 aa28.68■■■□□ 2.18
MBD3-208ENST00000590830 IGKV5-2P06315 115 aa28.67■■■□□ 2.18
MBD3-208ENST00000590830 FLIIQ13045 1269 aa28.67■■■□□ 2.18
MBD3-208ENST00000590830 CCDC191Q8NCU4 936 aa28.67■■■□□ 2.18
MBD3-208ENST00000590830 FER1L6Q2WGJ9 1857 aa28.67■■■□□ 2.18
MBD3-208ENST00000590830 SLFN5Q08AF3 891 aa28.66■■■□□ 2.18
MBD3-208ENST00000590830 JARID2Q92833 1246 aaPredicted RBP28.66■■■□□ 2.18
MBD3-208ENST00000590830 CDCA7LQ96GN5 454 aa28.66■■■□□ 2.18
MBD3-208ENST00000590830 ZBTB38Q8NAP3 1195 aaPredicted RBP28.65■■■□□ 2.18
MBD3-208ENST00000590830 ABCC4O15439 1325 aa28.65■■■□□ 2.18
MBD3-208ENST00000590830 SNED1Q8TER0 1413 aa28.64■■■□□ 2.18
MBD3-208ENST00000590830 E9PSI1 815 aa28.64■■■□□ 2.18
MBD3-208ENST00000590830 IRS4O14654 1257 aaPredicted RBP28.64■■■□□ 2.18
MBD3-208ENST00000590830 CWC25Q9NXE8 425 aaPredicted RBP28.64■■■□□ 2.18
MBD3-208ENST00000590830 RTKN2Q8IZC4 609 aa28.63■■■□□ 2.17
MBD3-208ENST00000590830 PPEF1O14829 653 aaPredicted RBP28.62■■■□□ 2.17
MBD3-208ENST00000590830 FKBP4Q02790 459 aaKnown RBP eCLIP28.62■■■□□ 2.17
MBD3-208ENST00000590830 SF3B3Q15393 1217 aaKnown RBP28.62■■■□□ 2.17
MBD3-208ENST00000590830 KIF3CO14782 793 aa28.61■■■□□ 2.17
MBD3-208ENST00000590830 PCCAP05165 728 aaPredicted RBP28.61■■■□□ 2.17
MBD3-208ENST00000590830 CWF19L2Q2TBE0 894 aaKnown RBP28.61■■■□□ 2.17
MBD3-208ENST00000590830 NMRK2Q9NPI5 230 aa28.61■■■□□ 2.17
MBD3-208ENST00000590830 ZNF277Q9NRM2 450 aaPredicted RBP28.61■■■□□ 2.17
MBD3-208ENST00000590830 FKBP5Q13451 457 aaPredicted RBP28.6■■■□□ 2.17
MBD3-208ENST00000590830 TRMT2AQ8IZ69 625 aaKnown RBP28.6■■■□□ 2.17
MBD3-208ENST00000590830 ZC3H4Q9UPT8 1303 aaKnown RBP28.6■■■□□ 2.17
MBD3-208ENST00000590830 LAMB2P55268 1798 aa28.6■■■□□ 2.17
MBD3-208ENST00000590830 NEURL1BA8MQ27 555 aa28.59■■■□□ 2.17
MBD3-208ENST00000590830 CC2D2BQ6DHV5 1058 aa28.59■■■□□ 2.17
MBD3-208ENST00000590830 DDX46Q7L014 1031 aaKnown RBP28.59■■■□□ 2.17
MBD3-208ENST00000590830 ATP6V0A2Q9Y487 856 aa28.59■■■□□ 2.17
MBD3-208ENST00000590830 DDX60Q8IY21 1712 aaKnown RBP28.59■■■□□ 2.17
MBD3-208ENST00000590830 BBOX1O75936 387 aa28.58■■■□□ 2.17
MBD3-208ENST00000590830 C1QTNF8P60827 252 aa28.58■■■□□ 2.17
MBD3-208ENST00000590830 CCDC88AQ3V6T2 1871 aa28.57■■■□□ 2.16
MBD3-208ENST00000590830 NEXNQ0ZGT2 675 aa28.57■■■□□ 2.16
MBD3-208ENST00000590830 GRAPQ13588 217 aa28.57■■■□□ 2.16
MBD3-208ENST00000590830 GRAPLQ8TC17 118 aaPredicted RBP28.57■■■□□ 2.16
MBD3-208ENST00000590830 DNAAF4Q8WXU2 420 aa28.57■■■□□ 2.16
MBD3-208ENST00000590830 PSMD1Q99460 953 aa28.57■■■□□ 2.16
MBD3-208ENST00000590830 F6X3S4 739 aa28.56■■■□□ 2.16
MBD3-208ENST00000590830 GLTPD2A6NH11 291 aa28.55■■■□□ 2.16
MBD3-208ENST00000590830 SP8Q8IXZ3 490 aa28.55■■■□□ 2.16
MBD3-208ENST00000590830 CELF1Q92879 486 aaKnown RBP28.55■■■□□ 2.16
MBD3-208ENST00000590830 KDM2BQ8NHM5 1336 aa28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms