RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 TM4SF1P30408 202 aa13.21□□□□□ -0.29
VPS4B-204ENST00000589604 NFIXQ14938 502 aa13.21□□□□□ -0.29
VPS4B-204ENST00000589604 ADCY9O60503 1353 aa13.21□□□□□ -0.29
VPS4B-204ENST00000589604 IGHDP01880 384 aa13.21□□□□□ -0.3
VPS4B-204ENST00000589604 PXDNLA1KZ92 1463 aa13.2□□□□□ -0.3
VPS4B-204ENST00000589604 ERVV-1B6SEH8 477 aa13.2□□□□□ -0.3
VPS4B-204ENST00000589604 MMP10P09238 476 aa13.2□□□□□ -0.3
VPS4B-204ENST00000589604 FKBP5Q13451 457 aaPredicted RBP13.2□□□□□ -0.3
VPS4B-204ENST00000589604 ANKRD36CQ5JPF3 1778 aa13.2□□□□□ -0.3
VPS4B-204ENST00000589604 KIF6Q6ZMV9 814 aa13.2□□□□□ -0.3
VPS4B-204ENST00000589604 BICDL1Q6ZP65 573 aa13.2□□□□□ -0.3
VPS4B-204ENST00000589604 AFDNP55196 1824 aaKnown RBP13.19□□□□□ -0.3
VPS4B-204ENST00000589604 UBN2Q6ZU65 1347 aa13.19□□□□□ -0.3
VPS4B-204ENST00000589604 GIGYF2Q6Y7W6 1299 aaKnown RBP13.19□□□□□ -0.3
VPS4B-204ENST00000589604 ANKRD13DQ6ZTN6 518 aa13.19□□□□□ -0.3
VPS4B-204ENST00000589604 NLGN1Q8N2Q7 840 aa13.19□□□□□ -0.3
VPS4B-204ENST00000589604 PLBD2Q8NHP8 589 aa13.19□□□□□ -0.3
VPS4B-204ENST00000589604 SPON1Q9HCB6 807 aa13.19□□□□□ -0.3
VPS4B-204ENST00000589604 PI4KAP2A4QPH2 592 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 POLRMTO00411 1230 aaKnown RBP13.18□□□□□ -0.3
VPS4B-204ENST00000589604 GPTP24298 496 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 NPM2Q86SE8 214 aaKnown RBP13.18□□□□□ -0.3
VPS4B-204ENST00000589604 PI4KAP1Q8N8J0 262 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 NRXN2Q9P2S2 1712 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 GOLGB1Q14789 3259 aaKnown RBP13.18□□□□□ -0.3
VPS4B-204ENST00000589604 LRP5O75197 1615 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 ATP10DQ9P241 1426 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 CLEC4GQ6UXB4 293 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 ZNF34Q8IZ26 560 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 TSHZ2Q9NRE2 1034 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 MAP3K2Q9Y2U5 619 aa13.18□□□□□ -0.3
VPS4B-204ENST00000589604 ATP5J2-PTCD1G3V325 749 aa13.17□□□□□ -0.3
VPS4B-204ENST00000589604 CCT4P50991 539 aaKnown RBP13.17□□□□□ -0.3
VPS4B-204ENST00000589604 NIP7Q9Y221 180 aaKnown RBP eCLIP13.17□□□□□ -0.3
VPS4B-204ENST00000589604 CARMIL3Q8ND23 1372 aa13.16□□□□□ -0.3
VPS4B-204ENST00000589604 RGL2O15211 777 aa13.16□□□□□ -0.3
VPS4B-204ENST00000589604 TCIRG1Q13488 830 aa13.16□□□□□ -0.3
VPS4B-204ENST00000589604 SLC4A10Q6U841 1118 aa13.16□□□□□ -0.3
VPS4B-204ENST00000589604 KSR2Q6VAB6 950 aa13.16□□□□□ -0.3
VPS4B-204ENST00000589604 CENPQQ7L2Z9 268 aaPredicted RBP13.16□□□□□ -0.3
VPS4B-204ENST00000589604 RIC3Q7Z5B4 369 aa13.16□□□□□ -0.3
VPS4B-204ENST00000589604 CCDC24Q8N4L8 307 aa13.16□□□□□ -0.3
VPS4B-204ENST00000589604 DNAAF4Q8WXU2 420 aa13.16□□□□□ -0.3
VPS4B-204ENST00000589604 MEIS3Q99687 375 aa13.16□□□□□ -0.3
VPS4B-204ENST00000589604 IGKV5-2P06315 115 aa13.15□□□□□ -0.3
VPS4B-204ENST00000589604 NBR1Q14596 966 aa13.15□□□□□ -0.3
VPS4B-204ENST00000589604 BEND3Q5T5X7 828 aa13.15□□□□□ -0.3
VPS4B-204ENST00000589604 SUSD4Q5VX71 490 aa13.15□□□□□ -0.3
VPS4B-204ENST00000589604 SIRT2Q8IXJ6 389 aa13.15□□□□□ -0.3
VPS4B-204ENST00000589604 SYNE4Q8N205 404 aa13.15□□□□□ -0.3
VPS4B-204ENST00000589604 ISCA1Q9BUE6 129 aa13.15□□□□□ -0.3
VPS4B-204ENST00000589604 ZNF652Q9Y2D9 606 aa13.15□□□□□ -0.3
VPS4B-204ENST00000589604 FAM177BA6PVY3 158 aa13.15□□□□□ -0.31
VPS4B-204ENST00000589604 SERPINB2P05120 415 aa13.15□□□□□ -0.31
VPS4B-204ENST00000589604 HDAC1Q13547 482 aaPredicted RBP13.15□□□□□ -0.31
VPS4B-204ENST00000589604 NLRP10Q86W26 655 aa13.15□□□□□ -0.31
VPS4B-204ENST00000589604 SETDB2Q96T68 719 aa13.15□□□□□ -0.31
VPS4B-204ENST00000589604 MYD88Q99836 296 aa13.15□□□□□ -0.31
VPS4B-204ENST00000589604 METTL22Q9BUU2 404 aaPredicted RBP13.15□□□□□ -0.31
VPS4B-204ENST00000589604 CHMP4BQ9H444 224 aaKnown RBP13.15□□□□□ -0.31
VPS4B-204ENST00000589604 ANKRD31Q8N7Z5 1873 aa13.14□□□□□ -0.31
VPS4B-204ENST00000589604 CWF19L2Q2TBE0 894 aaKnown RBP13.14□□□□□ -0.31
VPS4B-204ENST00000589604 USP44Q9H0E7 712 aa13.14□□□□□ -0.31
VPS4B-204ENST00000589604 C1orf115Q9H7X2 142 aa13.14□□□□□ -0.31
VPS4B-204ENST00000589604 PARP3Q9Y6F1 533 aa13.14□□□□□ -0.31
VPS4B-204ENST00000589604 KIAA1551Q9HCM1 1747 aa13.14□□□□□ -0.31
VPS4B-204ENST00000589604 C10orf71Q711Q0 1435 aa13.13□□□□□ -0.31
VPS4B-204ENST00000589604 NTSR2O95665 410 aa13.13□□□□□ -0.31
VPS4B-204ENST00000589604 DDX58O95786 925 aaKnown RBP13.13□□□□□ -0.31
VPS4B-204ENST00000589604 POLD1P28340 1107 aa13.13□□□□□ -0.31
VPS4B-204ENST00000589604 PRR5LQ6MZQ0 368 aa13.13□□□□□ -0.31
VPS4B-204ENST00000589604 KIF13BQ9NQT8 1826 aa13.13□□□□□ -0.31
VPS4B-204ENST00000589604 TNRC6CQ9HCJ0 1690 aaKnown RBP13.12□□□□□ -0.31
VPS4B-204ENST00000589604 NUTM1Q86Y26 1132 aa13.12□□□□□ -0.31
VPS4B-204ENST00000589604 JARID2Q92833 1246 aaPredicted RBP13.12□□□□□ -0.31
VPS4B-204ENST00000589604 SRCIN1Q9C0H9 1055 aa13.12□□□□□ -0.31
VPS4B-204ENST00000589604 ABCC12Q96J65 1359 aa13.12□□□□□ -0.31
VPS4B-204ENST00000589604 TRIM28Q13263 835 aaKnown RBP13.12□□□□□ -0.31
VPS4B-204ENST00000589604 ERFEQ4G0M1 354 aa13.12□□□□□ -0.31
VPS4B-204ENST00000589604 SKAP1Q86WV1 359 aa13.12□□□□□ -0.31
VPS4B-204ENST00000589604 RWDD1Q9H446 243 aaPredicted RBP13.12□□□□□ -0.31
VPS4B-204ENST00000589604 IBTKQ9P2D0 1353 aaPredicted RBP13.11□□□□□ -0.31
VPS4B-204ENST00000589604 NEURL1BA8MQ27 555 aa13.11□□□□□ -0.31
VPS4B-204ENST00000589604 HSP90AB3PQ58FF7 597 aa13.11□□□□□ -0.31
VPS4B-204ENST00000589604 C3orf67Q6ZVT6 689 aa13.11□□□□□ -0.31
VPS4B-204ENST00000589604 NBPF5PQ86XG9 351 aaPredicted RBP13.11□□□□□ -0.31
VPS4B-204ENST00000589604 SPRYD3Q8NCJ5 442 aa13.11□□□□□ -0.31
VPS4B-204ENST00000589604 NLGN2Q8NFZ4 835 aa13.11□□□□□ -0.31
VPS4B-204ENST00000589604 FHDC1Q9C0D6 1143 aaPredicted RBP13.11□□□□□ -0.31
VPS4B-204ENST00000589604 SPDYE4A6NLX3 237 aa13.1□□□□□ -0.31
VPS4B-204ENST00000589604 ALDH1L1O75891 902 aa13.1□□□□□ -0.31
VPS4B-204ENST00000589604 PARP10Q53GL7 1025 aa13.1□□□□□ -0.31
VPS4B-204ENST00000589604 ANKRD44Q8N8A2 993 aa13.1□□□□□ -0.31
VPS4B-204ENST00000589604 LINS1Q8NG48 757 aa13.1□□□□□ -0.31
VPS4B-204ENST00000589604 COL11A2P13942 1736 aaPredicted RBP13.1□□□□□ -0.31
VPS4B-204ENST00000589604 DDX60Q8IY21 1712 aaKnown RBP13.1□□□□□ -0.31
VPS4B-204ENST00000589604 GNAI3P08754 354 aa13.09□□□□□ -0.31
VPS4B-204ENST00000589604 RTL5Q5HYW3 569 aaPredicted RBP13.09□□□□□ -0.31
VPS4B-204ENST00000589604 CEP85Q6P2H3 762 aa13.09□□□□□ -0.31
VPS4B-204ENST00000589604 SMC5Q8IY18 1101 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms