RNA–Protein interactions for RNA: ENST00000584755.1

UBBP4-202, Transcript of ubiquitin B pseudogene 4, humanhuman

TSL 1 (best) BASIC

Gene UBBP4, Length 1,459 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-202ENST00000584755 PLA2G12BQ9BX93 195 aa17.36■□□□□ 0.37
UBBP4-202ENST00000584755 EP400Q96L91 3159 aa17.35■□□□□ 0.37
UBBP4-202ENST00000584755 CDHR2Q9BYE9 1310 aa17.35■□□□□ 0.37
UBBP4-202ENST00000584755 FOXO4P98177 505 aa17.35■□□□□ 0.37
UBBP4-202ENST00000584755 HSP90AB4PQ58FF6 505 aa17.35■□□□□ 0.37
UBBP4-202ENST00000584755 CLEC4GQ6UXB4 293 aa17.35■□□□□ 0.37
UBBP4-202ENST00000584755 JARID2Q92833 1246 aaPredicted RBP17.35■□□□□ 0.37
UBBP4-202ENST00000584755 LRRC4BQ9NT99 713 aa17.35■□□□□ 0.37
UBBP4-202ENST00000584755 UBN2Q6ZU65 1347 aa17.34■□□□□ 0.37
UBBP4-202ENST00000584755 BACH2Q9BYV9 841 aa17.34■□□□□ 0.37
UBBP4-202ENST00000584755 LRRCC1Q9C099 1032 aa17.34■□□□□ 0.37
UBBP4-202ENST00000584755 SURF6O75683 361 aaKnown RBP17.33■□□□□ 0.37
UBBP4-202ENST00000584755 GPTP24298 496 aa17.33■□□□□ 0.37
UBBP4-202ENST00000584755 HMGB2P26583 209 aaKnown RBP17.33■□□□□ 0.37
UBBP4-202ENST00000584755 RFX5P48382 616 aaPredicted RBP17.33■□□□□ 0.37
UBBP4-202ENST00000584755 ZBTB47Q9UFB7 747 aaPredicted RBP17.33■□□□□ 0.37
UBBP4-202ENST00000584755 PLSCR1O15162 318 aa17.32■□□□□ 0.36
UBBP4-202ENST00000584755 GNPATO15228 680 aa17.32■□□□□ 0.36
UBBP4-202ENST00000584755 FAM161AQ3B820 660 aa17.32■□□□□ 0.36
UBBP4-202ENST00000584755 PARP10Q53GL7 1025 aa17.32■□□□□ 0.36
UBBP4-202ENST00000584755 PLEKHM2Q8IWE5 1019 aa17.32■□□□□ 0.36
UBBP4-202ENST00000584755 COPRSQ9NQ92 184 aa17.32■□□□□ 0.36
UBBP4-202ENST00000584755 ZNF652Q9Y2D9 606 aa17.32■□□□□ 0.36
UBBP4-202ENST00000584755 RTCBQ9Y3I0 505 aaKnown RBP17.32■□□□□ 0.36
UBBP4-202ENST00000584755 SALL3Q9BXA9 1300 aa17.32■□□□□ 0.36
UBBP4-202ENST00000584755 TNS1Q9HBL0 1735 aaKnown RBP17.31■□□□□ 0.36
UBBP4-202ENST00000584755 SMARCA5O60264 1052 aaPredicted RBP17.31■□□□□ 0.36
UBBP4-202ENST00000584755 C8orf34Q49A92 452 aa17.31■□□□□ 0.36
UBBP4-202ENST00000584755 KIF1BPQ96EK5 621 aa17.31■□□□□ 0.36
UBBP4-202ENST00000584755 NARFQ9UHQ1 456 aa17.31■□□□□ 0.36
UBBP4-202ENST00000584755 RGPD3A6NKT7 1758 aaPredicted RBP17.31■□□□□ 0.36
UBBP4-202ENST00000584755 RGPD4Q7Z3J3 1758 aa17.31■□□□□ 0.36
UBBP4-202ENST00000584755 LMBR1LQ6UX01 489 aa17.31■□□□□ 0.36
UBBP4-202ENST00000584755 C16orf71Q8IYS4 520 aaPredicted RBP17.31■□□□□ 0.36
UBBP4-202ENST00000584755 RHPN1Q8TCX5 695 aa17.31■□□□□ 0.36
UBBP4-202ENST00000584755 UBR3Q6ZT12 1888 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 C4AP0C0L4 1744 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 APBB1O00213 710 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 CSF1RP07333 972 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 PTPN12Q05209 780 aaKnown RBP17.3■□□□□ 0.36
UBBP4-202ENST00000584755 BMP2KLQ5H9B9 411 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 AMIGO3Q86WK7 504 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 ERC1Q8IUD2 1116 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 PROM2Q8N271 834 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 FAM89AQ96GI7 184 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 OSBPL3Q9H4L5 887 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 BCL2L12Q9HB09 334 aa17.3■□□□□ 0.36
UBBP4-202ENST00000584755 PA2G4Q9UQ80 394 aaKnown RBP17.3■□□□□ 0.36
UBBP4-202ENST00000584755 ADRA2BP18089 450 aa17.29■□□□□ 0.36
UBBP4-202ENST00000584755 TXNRD1Q16881 649 aa17.29■□□□□ 0.36
UBBP4-202ENST00000584755 RTL5Q5HYW3 569 aaPredicted RBP17.29■□□□□ 0.36
UBBP4-202ENST00000584755 OTUD7AQ8TE49 926 aaPredicted RBP17.29■□□□□ 0.36
UBBP4-202ENST00000584755 AK7Q96M32 723 aa17.29■□□□□ 0.36
UBBP4-202ENST00000584755 TRMT112Q9UI30 125 aaKnown RBP17.29■□□□□ 0.36
UBBP4-202ENST00000584755 SUSD4Q5VX71 490 aa17.28■□□□□ 0.36
UBBP4-202ENST00000584755 ARHGEF1Q92888 912 aaKnown RBP17.28■□□□□ 0.36
UBBP4-202ENST00000584755 COL24A1Q17RW2 1714 aa17.28■□□□□ 0.36
UBBP4-202ENST00000584755 LAMB2P55268 1798 aa17.27■□□□□ 0.36
UBBP4-202ENST00000584755 MYH3P11055 1940 aa17.27■□□□□ 0.36
UBBP4-202ENST00000584755 NTSR2O95665 410 aa17.27■□□□□ 0.36
UBBP4-202ENST00000584755 UTP14AQ9BVJ6 771 aaKnown RBP17.27■□□□□ 0.36
UBBP4-202ENST00000584755 NIP7Q9Y221 180 aaKnown RBP eCLIP17.27■□□□□ 0.36
UBBP4-202ENST00000584755 IRS4O14654 1257 aaPredicted RBP17.26■□□□□ 0.35
UBBP4-202ENST00000584755 G3BP1Q13283 466 aaKnown RBP eCLIP17.26■□□□□ 0.35
UBBP4-202ENST00000584755 TRAPPC3LQ5T215 181 aa17.26■□□□□ 0.35
UBBP4-202ENST00000584755 SMIM5Q71RC9 77 aa17.26■□□□□ 0.35
UBBP4-202ENST00000584755 SYNE4Q8N205 404 aa17.26■□□□□ 0.35
UBBP4-202ENST00000584755 STAP2Q9UGK3 403 aa17.26■□□□□ 0.35
UBBP4-202ENST00000584755 SH3TC1Q8TE82 1336 aa17.26■□□□□ 0.35
UBBP4-202ENST00000584755 USP42Q9H9J4 1324 aaKnown RBP17.26■□□□□ 0.35
UBBP4-202ENST00000584755 PDE8AO60658 829 aa17.25■□□□□ 0.35
UBBP4-202ENST00000584755 SASH1O94885 1247 aa17.25■□□□□ 0.35
UBBP4-202ENST00000584755 APBA3O96018 575 aa17.25■□□□□ 0.35
UBBP4-202ENST00000584755 PDE1AP54750 535 aa17.25■□□□□ 0.35
UBBP4-202ENST00000584755 OS9Q13438 667 aaPredicted RBP17.25■□□□□ 0.35
UBBP4-202ENST00000584755 USPL1Q5W0Q7 1092 aa17.25■□□□□ 0.35
UBBP4-202ENST00000584755 KLHDC4Q8TBB5 520 aa17.25■□□□□ 0.35
UBBP4-202ENST00000584755 DDX60Q8IY21 1712 aaKnown RBP17.25■□□□□ 0.35
UBBP4-202ENST00000584755 ZPR1O75312 459 aa17.24■□□□□ 0.35
UBBP4-202ENST00000584755 SSFA2P28290 1259 aa17.24■□□□□ 0.35
UBBP4-202ENST00000584755 CTSWP56202 376 aa17.24■□□□□ 0.35
UBBP4-202ENST00000584755 TTC22Q5TAA0 569 aa17.24■□□□□ 0.35
UBBP4-202ENST00000584755 TTLL11Q8NHH1 800 aa17.24■□□□□ 0.35
UBBP4-202ENST00000584755 IL1RAPL2Q9NP60 686 aa17.24■□□□□ 0.35
UBBP4-202ENST00000584755 SRP68Q9UHB9 627 aaKnown RBP17.24■□□□□ 0.35
UBBP4-202ENST00000584755 FBXO3Q9UK99 471 aa17.24■□□□□ 0.35
UBBP4-202ENST00000584755 RBM19Q9Y4C8 960 aaKnown RBP17.24■□□□□ 0.35
UBBP4-202ENST00000584755 AOX1Q06278 1338 aa17.24■□□□□ 0.35
UBBP4-202ENST00000584755 GSPT1P15170 499 aaKnown RBP17.24■□□□□ 0.35
UBBP4-202ENST00000584755 MX1P20591 662 aa17.24■□□□□ 0.35
UBBP4-202ENST00000584755 TUBGCP6Q96RT7 1819 aa17.23■□□□□ 0.35
UBBP4-202ENST00000584755 CIAO1O76071 339 aa17.23■□□□□ 0.35
UBBP4-202ENST00000584755 HSP90B1P14625 803 aaKnown RBP17.23■□□□□ 0.35
UBBP4-202ENST00000584755 TBC1D9BQ66K14 1250 aa17.23■□□□□ 0.35
UBBP4-202ENST00000584755 SIL1Q9H173 461 aa17.23■□□□□ 0.35
UBBP4-202ENST00000584755 CHMP3Q9Y3E7 222 aa17.23■□□□□ 0.35
UBBP4-202ENST00000584755 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.22■□□□□ 0.35
UBBP4-202ENST00000584755 RFC4P35249 363 aa17.22■□□□□ 0.35
UBBP4-202ENST00000584755 ATG9AQ7Z3C6 839 aa17.22■□□□□ 0.35
UBBP4-202ENST00000584755 CLASRPQ8N2M8 674 aaKnown RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms