RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 PIP4K2AP48426 406 aaPredicted RBP14.46□□□□□ -0.09
TOP3A-210ENST00000580713 TPTE2Q6XPS3 522 aa14.46□□□□□ -0.09
TOP3A-210ENST00000580713 UBR2Q8IWV8 1755 aa14.45□□□□□ -0.1
TOP3A-210ENST00000580713 ARFGEF2Q9Y6D5 1785 aa14.45□□□□□ -0.1
TOP3A-210ENST00000580713 GTF2E1P29083 439 aaPredicted RBP14.45□□□□□ -0.1
TOP3A-210ENST00000580713 MAP2K2P36507 400 aa14.45□□□□□ -0.1
TOP3A-210ENST00000580713 EPS15P42566 896 aa14.45□□□□□ -0.1
TOP3A-210ENST00000580713 DGKZQ13574 1117 aa14.45□□□□□ -0.1
TOP3A-210ENST00000580713 CLEC4GQ6UXB4 293 aa14.45□□□□□ -0.1
TOP3A-210ENST00000580713 CA12O43570 354 aa14.44□□□□□ -0.1
TOP3A-210ENST00000580713 CST9Q5W186 159 aa14.44□□□□□ -0.1
TOP3A-210ENST00000580713 CHRDL2Q6WN34 429 aa14.44□□□□□ -0.1
TOP3A-210ENST00000580713 IL17REQ8NFR9 667 aa14.44□□□□□ -0.1
TOP3A-210ENST00000580713 NIP7Q9Y221 180 aaKnown RBP eCLIP14.44□□□□□ -0.1
TOP3A-210ENST00000580713 TLL2Q9Y6L7 1015 aa14.44□□□□□ -0.1
TOP3A-210ENST00000580713 KLRG2A4D1S0 409 aaPredicted RBP14.43□□□□□ -0.1
TOP3A-210ENST00000580713 GNAT3A8MTJ3 354 aa14.43□□□□□ -0.1
TOP3A-210ENST00000580713 DIAPH1O60610 1272 aaKnown RBP14.43□□□□□ -0.1
TOP3A-210ENST00000580713 LARGE2Q8N3Y3 721 aa14.43□□□□□ -0.1
TOP3A-210ENST00000580713 USP50Q70EL3 339 aaPredicted RBP14.42□□□□□ -0.1
TOP3A-210ENST00000580713 PSMD1Q99460 953 aa14.42□□□□□ -0.1
TOP3A-210ENST00000580713 USP16Q9Y5T5 823 aa14.42□□□□□ -0.1
TOP3A-210ENST00000580713 BTBD11A6QL63 1104 aa14.41□□□□□ -0.1
TOP3A-210ENST00000580713 KCNQ3O43525 872 aa14.41□□□□□ -0.1
TOP3A-210ENST00000580713 CELF2O95319 508 aaKnown RBP14.41□□□□□ -0.1
TOP3A-210ENST00000580713 SCNN1DP51172 638 aa14.41□□□□□ -0.1
TOP3A-210ENST00000580713 GAS2L2Q8NHY3 880 aa14.41□□□□□ -0.1
TOP3A-210ENST00000580713 CASP8AP2Q9UKL3 1982 aa14.4□□□□□ -0.1
TOP3A-210ENST00000580713 U2SURPO15042 1029 aaKnown RBP14.4□□□□□ -0.1
TOP3A-210ENST00000580713 EIF4G2P78344 907 aaKnown RBP eCLIP14.4□□□□□ -0.1
TOP3A-210ENST00000580713 CC2D2BQ6DHV5 1058 aa14.4□□□□□ -0.1
TOP3A-210ENST00000580713 SSUH2Q9Y2M2 353 aa14.4□□□□□ -0.1
TOP3A-210ENST00000580713 THSD7BQ9C0I4 1608 aa14.4□□□□□ -0.1
TOP3A-210ENST00000580713 PDE4DIPQ5VU43 2346 aa14.4□□□□□ -0.11
TOP3A-210ENST00000580713 TCERG1O14776 1098 aaKnown RBP14.39□□□□□ -0.11
TOP3A-210ENST00000580713 HSPA5P11021 654 aaKnown RBP14.39□□□□□ -0.11
TOP3A-210ENST00000580713 BRPF1P55201 1214 aaPredicted RBP14.39□□□□□ -0.11
TOP3A-210ENST00000580713 CIAPIN1Q6FI81 312 aa14.39□□□□□ -0.11
TOP3A-210ENST00000580713 SAPCD2Q86UD0 394 aa14.39□□□□□ -0.11
TOP3A-210ENST00000580713 NIM1KQ8IY84 436 aa14.39□□□□□ -0.11
TOP3A-210ENST00000580713 ZNF408Q9H9D4 720 aa14.39□□□□□ -0.11
TOP3A-210ENST00000580713 BCORQ6W2J9 1755 aa14.38□□□□□ -0.11
TOP3A-210ENST00000580713 PRAMEF22A3QJZ6 481 aa14.38□□□□□ -0.11
TOP3A-210ENST00000580713 RPGRQ92834 1020 aaKnown RBP14.38□□□□□ -0.11
TOP3A-210ENST00000580713 ADARB2Q9NS39 739 aaKnown RBP14.38□□□□□ -0.11
TOP3A-210ENST00000580713 TRPM7Q96QT4 1865 aa14.38□□□□□ -0.11
TOP3A-210ENST00000580713 ZNF316A6NFI3 1004 aaPredicted RBP14.37□□□□□ -0.11
TOP3A-210ENST00000580713 PITPNM1O00562 1244 aa14.37□□□□□ -0.11
TOP3A-210ENST00000580713 SNRPA1P09661 255 aaKnown RBP14.37□□□□□ -0.11
TOP3A-210ENST00000580713 GLIS2Q9BZE0 524 aaPredicted RBP14.37□□□□□ -0.11
TOP3A-210ENST00000580713 LTBP1Q14766 1721 aa14.37□□□□□ -0.11
TOP3A-210ENST00000580713 SOX10P56693 466 aa14.36□□□□□ -0.11
TOP3A-210ENST00000580713 HLFQ16534 295 aa14.36□□□□□ -0.11
TOP3A-210ENST00000580713 AMER1Q5JTC6 1135 aaPredicted RBP14.36□□□□□ -0.11
TOP3A-210ENST00000580713 NUTM1Q86Y26 1132 aa14.36□□□□□ -0.11
TOP3A-210ENST00000580713 NYXQ9GZU5 481 aa14.36□□□□□ -0.11
TOP3A-210ENST00000580713 COL4A5P29400 1685 aa14.36□□□□□ -0.11
TOP3A-210ENST00000580713 PPIP5K2O43314 1243 aa14.35□□□□□ -0.11
TOP3A-210ENST00000580713 GRIPAP1Q4V328 841 aa14.35□□□□□ -0.11
TOP3A-210ENST00000580713 HHIPL1Q96JK4 782 aa14.35□□□□□ -0.11
TOP3A-210ENST00000580713 TMX4Q9H1E5 349 aaPredicted RBP14.35□□□□□ -0.11
TOP3A-210ENST00000580713 GPRC5DQ9NZD1 345 aa14.35□□□□□ -0.11
TOP3A-210ENST00000580713 NBPF26B4DH59 902 aa14.34□□□□□ -0.11
TOP3A-210ENST00000580713 NOGQ13253 232 aa14.34□□□□□ -0.11
TOP3A-210ENST00000580713 AOC3Q16853 763 aa14.34□□□□□ -0.11
TOP3A-210ENST00000580713 CRY2Q49AN0 593 aa14.34□□□□□ -0.11
TOP3A-210ENST00000580713 NBPF10Q6P3W6 841 aaKnown RBP14.34□□□□□ -0.11
TOP3A-210ENST00000580713 NGEFQ8N5V2 710 aa14.34□□□□□ -0.11
TOP3A-210ENST00000580713 NBPF15Q8N660 670 aa14.34□□□□□ -0.11
TOP3A-210ENST00000580713 RBM17Q96I25 401 aaKnown RBP14.34□□□□□ -0.11
TOP3A-210ENST00000580713 SNED1Q8TER0 1413 aa14.33□□□□□ -0.11
TOP3A-210ENST00000580713 PPEF1O14829 653 aaPredicted RBP14.33□□□□□ -0.12
TOP3A-210ENST00000580713 RGL2O15211 777 aa14.33□□□□□ -0.12
TOP3A-210ENST00000580713 CNGB1Q14028 1251 aaPredicted RBP14.33□□□□□ -0.12
TOP3A-210ENST00000580713 CC2D1BQ5T0F9 858 aaKnown RBP14.33□□□□□ -0.12
TOP3A-210ENST00000580713 CEMIPQ8WUJ3 1361 aa14.33□□□□□ -0.12
TOP3A-210ENST00000580713 ABCC12Q96J65 1359 aa14.33□□□□□ -0.12
TOP3A-210ENST00000580713 TNRC18O15417 2968 aaPredicted RBP14.32□□□□□ -0.12
TOP3A-210ENST00000580713 GMPSP49915 693 aaPredicted RBP14.32□□□□□ -0.12
TOP3A-210ENST00000580713 HUNKP57058 714 aa14.32□□□□□ -0.12
TOP3A-210ENST00000580713 SLC51AQ86UW1 340 aa14.32□□□□□ -0.12
TOP3A-210ENST00000580713 RTF1Q92541 710 aaKnown RBP14.32□□□□□ -0.12
TOP3A-210ENST00000580713 ZIC5Q96T25 663 aa14.32□□□□□ -0.12
TOP3A-210ENST00000580713 BCL2L13Q9BXK5 485 aa14.32□□□□□ -0.12
TOP3A-210ENST00000580713 NPC1L1Q9UHC9 1359 aa14.32□□□□□ -0.12
TOP3A-210ENST00000580713 SIPA1L3O60292 1781 aaPredicted RBP14.32□□□□□ -0.12
TOP3A-210ENST00000580713 HOXA10P31260 410 aaPredicted RBP14.31□□□□□ -0.12
TOP3A-210ENST00000580713 CXCL9Q07325 125 aa14.31□□□□□ -0.12
TOP3A-210ENST00000580713 PRPF38BQ5VTL8 546 aaKnown RBP14.31□□□□□ -0.12
TOP3A-210ENST00000580713 CDC37L1Q7L3B6 337 aa14.31□□□□□ -0.12
TOP3A-210ENST00000580713 CRAMP1Q96RY5 1269 aa14.31□□□□□ -0.12
TOP3A-210ENST00000580713 ZNRF3Q9ULT6 936 aa14.31□□□□□ -0.12
TOP3A-210ENST00000580713 GPTP24298 496 aa14.3□□□□□ -0.12
TOP3A-210ENST00000580713 PHACTR3Q96KR7 559 aa14.3□□□□□ -0.12
TOP3A-210ENST00000580713 FBXO3Q9UK99 471 aa14.3□□□□□ -0.12
TOP3A-210ENST00000580713 PRKAR2BP31323 418 aa14.29□□□□□ -0.12
TOP3A-210ENST00000580713 MCM10Q7L590 875 aa14.29□□□□□ -0.12
TOP3A-210ENST00000580713 USP48Q86UV5 1035 aa14.29□□□□□ -0.12
TOP3A-210ENST00000580713 SUPT20HQ8NEM7 779 aa14.29□□□□□ -0.12
TOP3A-210ENST00000580713 ZC3H15Q8WU90 426 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms