RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 V9GYY5 206 aaPredicted RBP16.3■□□□□ 0.2
ITGB4-207ENST00000580542 KIAA0232Q92628 1395 aa16.3■□□□□ 0.2
ITGB4-207ENST00000580542 GADD45BO75293 160 aaPredicted RBP16.29■□□□□ 0.2
ITGB4-207ENST00000580542 RTF1Q92541 710 aaKnown RBP16.29■□□□□ 0.2
ITGB4-207ENST00000580542 RBM6P78332 1123 aaKnown RBP16.29■□□□□ 0.2
ITGB4-207ENST00000580542 CTR9Q6PD62 1173 aa16.29■□□□□ 0.2
ITGB4-207ENST00000580542 OTUD7AQ8TE49 926 aaPredicted RBP16.29■□□□□ 0.2
ITGB4-207ENST00000580542 LTV1Q96GA3 475 aaPredicted RBP16.29■□□□□ 0.2
ITGB4-207ENST00000580542 OVOS2A0A0G2JMS6 1433 aa16.29■□□□□ 0.2
ITGB4-207ENST00000580542 MAP3K5Q99683 1374 aa16.28■□□□□ 0.2
ITGB4-207ENST00000580542 CHL1O00533 1208 aa16.28■□□□□ 0.2
ITGB4-207ENST00000580542 ZC3H6P61129 1189 aaKnown RBP16.28■□□□□ 0.2
ITGB4-207ENST00000580542 KRT24Q2M2I5 525 aa16.28■□□□□ 0.2
ITGB4-207ENST00000580542 ICE2Q659A1 982 aa16.28■□□□□ 0.2
ITGB4-207ENST00000580542 ANKRD44Q8N8A2 993 aa16.28■□□□□ 0.2
ITGB4-207ENST00000580542 CABLES1Q8TDN4 633 aa16.28■□□□□ 0.2
ITGB4-207ENST00000580542 REC8O95072 547 aa16.28■□□□□ 0.2
ITGB4-207ENST00000580542 FAM53CQ9NYF3 392 aa16.28■□□□□ 0.2
ITGB4-207ENST00000580542 CEMIPQ8WUJ3 1361 aa16.27■□□□□ 0.2
ITGB4-207ENST00000580542 GYS2P54840 703 aa16.27■□□□□ 0.2
ITGB4-207ENST00000580542 LRRC59Q96AG4 307 aaKnown RBP16.27■□□□□ 0.2
ITGB4-207ENST00000580542 USP26Q9BXU7 913 aa16.27■□□□□ 0.2
ITGB4-207ENST00000580542 PTGS1P23219 599 aa16.27■□□□□ 0.2
ITGB4-207ENST00000580542 CCDC183Q5T5S1 534 aa16.27■□□□□ 0.2
ITGB4-207ENST00000580542 FBXO38Q6PIJ6 1188 aa16.27■□□□□ 0.2
ITGB4-207ENST00000580542 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.27■□□□□ 0.2
ITGB4-207ENST00000580542 SIPA1L3O60292 1781 aaPredicted RBP16.27■□□□□ 0.19
ITGB4-207ENST00000580542 CEP85Q6P2H3 762 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 SYT10Q6XYQ8 523 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 GTF3C6Q969F1 213 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 TOMM22Q9NS69 142 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 USHBP1Q8N6Y0 703 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 GPATCH11Q8N954 259 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 NEK11Q8NG66 645 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 KIF1BPQ96EK5 621 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 PHLPP1O60346 1717 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 COL5A2P05997 1499 aaPredicted RBP16.26■□□□□ 0.19
ITGB4-207ENST00000580542 SMARCA5O60264 1052 aaPredicted RBP16.26■□□□□ 0.19
ITGB4-207ENST00000580542 TPD52L1Q16890 204 aaPredicted RBP16.26■□□□□ 0.19
ITGB4-207ENST00000580542 EP400NLQ6ZTU2 488 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 NCAPGQ9BPX3 1015 aa16.26■□□□□ 0.19
ITGB4-207ENST00000580542 KDM3BQ7LBC6 1761 aa16.25■□□□□ 0.19
ITGB4-207ENST00000580542 GNAT3A8MTJ3 354 aa16.25■□□□□ 0.19
ITGB4-207ENST00000580542 TRIM66O15016 1216 aa16.25■□□□□ 0.19
ITGB4-207ENST00000580542 CASQ1P31415 396 aa16.25■□□□□ 0.19
ITGB4-207ENST00000580542 TEX35Q5T0J7 233 aa16.25■□□□□ 0.19
ITGB4-207ENST00000580542 BABAM1Q9NWV8 329 aa16.25■□□□□ 0.19
ITGB4-207ENST00000580542 KRBA2Q6ZNG9 492 aa16.25■□□□□ 0.19
ITGB4-207ENST00000580542 USP48Q86UV5 1035 aa16.25■□□□□ 0.19
ITGB4-207ENST00000580542 BANK1Q8NDB2 785 aa16.25■□□□□ 0.19
ITGB4-207ENST00000580542 COL14A1Q05707 1796 aaKnown RBP16.24■□□□□ 0.19
ITGB4-207ENST00000580542 PARP4Q9UKK3 1724 aaKnown RBP16.24■□□□□ 0.19
ITGB4-207ENST00000580542 MYO1CO00159 1063 aa16.24■□□□□ 0.19
ITGB4-207ENST00000580542 AP5Z1O43299 807 aa16.24■□□□□ 0.19
ITGB4-207ENST00000580542 BRD1O95696 1058 aa16.24■□□□□ 0.19
ITGB4-207ENST00000580542 BMS1Q14692 1282 aaKnown RBP16.24■□□□□ 0.19
ITGB4-207ENST00000580542 AMOTQ4VCS5 1084 aa16.24■□□□□ 0.19
ITGB4-207ENST00000580542 SAMD1Q6SPF0 538 aaPredicted RBP16.24■□□□□ 0.19
ITGB4-207ENST00000580542 MCM10Q7L590 875 aa16.24■□□□□ 0.19
ITGB4-207ENST00000580542 RPAP2Q8IXW5 612 aaPredicted RBP16.24■□□□□ 0.19
ITGB4-207ENST00000580542 ZNF215Q9UL58 517 aaPredicted RBP16.24■□□□□ 0.19
ITGB4-207ENST00000580542 SDSP20132 328 aa16.24■□□□□ 0.19
ITGB4-207ENST00000580542 ELF2Q15723 593 aa16.24■□□□□ 0.19
ITGB4-207ENST00000580542 TXLNBQ8N3L3 684 aa16.24■□□□□ 0.19
ITGB4-207ENST00000580542 NPHP1O15259 732 aa16.23■□□□□ 0.19
ITGB4-207ENST00000580542 DRC7Q8IY82 874 aa16.23■□□□□ 0.19
ITGB4-207ENST00000580542 PATL2C9JE40 543 aaKnown RBP16.22■□□□□ 0.19
ITGB4-207ENST00000580542 CEP135Q66GS9 1140 aa16.22■□□□□ 0.19
ITGB4-207ENST00000580542 MEIS3Q99687 375 aa16.22■□□□□ 0.19
ITGB4-207ENST00000580542 ZNF446Q9NWS9 450 aa16.22■□□□□ 0.19
ITGB4-207ENST00000580542 SCN11AQ9UI33 1791 aa16.22■□□□□ 0.19
ITGB4-207ENST00000580542 MX1P20591 662 aa16.22■□□□□ 0.19
ITGB4-207ENST00000580542 LRMPQ12912 555 aa16.22■□□□□ 0.19
ITGB4-207ENST00000580542 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.22■□□□□ 0.19
ITGB4-207ENST00000580542 MEGF6O75095 1541 aa16.22■□□□□ 0.19
ITGB4-207ENST00000580542 APBB1O00213 710 aa16.21■□□□□ 0.19
ITGB4-207ENST00000580542 IL17REQ8NFR9 667 aa16.21■□□□□ 0.19
ITGB4-207ENST00000580542 PLEKHO1Q53GL0 409 aaPredicted RBP16.21■□□□□ 0.19
ITGB4-207ENST00000580542 MUM1L1Q5H9M0 696 aa16.21■□□□□ 0.19
ITGB4-207ENST00000580542 AKAP4Q5JQC9 854 aa16.21■□□□□ 0.19
ITGB4-207ENST00000580542 CCDC186Q7Z3E2 898 aa16.21■□□□□ 0.19
ITGB4-207ENST00000580542 GOLGA6L1Q8N7Z2 621 aa16.21■□□□□ 0.19
ITGB4-207ENST00000580542 CCDC191Q8NCU4 936 aa16.21■□□□□ 0.19
ITGB4-207ENST00000580542 POLR3GO15318 223 aaPredicted RBP16.21■□□□□ 0.18
ITGB4-207ENST00000580542 BRMS1Q9HCU9 246 aa16.21■□□□□ 0.18
ITGB4-207ENST00000580542 WDR17Q8IZU2 1322 aa16.2■□□□□ 0.18
ITGB4-207ENST00000580542 GUCY2CP25092 1073 aa16.2■□□□□ 0.18
ITGB4-207ENST00000580542 LCMT1Q9UIC8 334 aa16.2■□□□□ 0.18
ITGB4-207ENST00000580542 LRRFIP2Q9Y608 721 aaKnown RBP16.2■□□□□ 0.18
ITGB4-207ENST00000580542 PTPRCP08575 1304 aa16.2■□□□□ 0.18
ITGB4-207ENST00000580542 CHRNA2Q15822 529 aa16.2■□□□□ 0.18
ITGB4-207ENST00000580542 NFATC2IPQ8NCF5 419 aa16.2■□□□□ 0.18
ITGB4-207ENST00000580542 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.2■□□□□ 0.18
ITGB4-207ENST00000580542 SHANK3Q9BYB0 1731 aa16.2■□□□□ 0.18
ITGB4-207ENST00000580542 HAP1P54257 671 aaPredicted RBP16.19■□□□□ 0.18
ITGB4-207ENST00000580542 CT47A1Q5JQC4 288 aaPredicted RBP16.19■□□□□ 0.18
ITGB4-207ENST00000580542 PLCH1Q4KWH8 1693 aa16.19■□□□□ 0.18
ITGB4-207ENST00000580542 GIMAP6Q6P9H5 292 aa16.19■□□□□ 0.18
ITGB4-207ENST00000580542 TMX3Q96JJ7 454 aa16.19■□□□□ 0.18
ITGB4-207ENST00000580542 DRC1Q96MC2 740 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms