RNA–Protein interactions for RNA: ENST00000578830.5

NUP85-208, Transcript of nucleoporin 85, human

TSL 5

Gene NUP85, Length 922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-208	ENST00000578830	MKRN1	Q9UHC7	482 aa	Known RBP	11.79	□□□□□ -0.52
NUP85-208	ENST00000578830	COLQ	Q9Y215	455 aa	Predicted RBP	11.79	□□□□□ -0.52
NUP85-208	ENST00000578830	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.79	□□□□□ -0.52
NUP85-208	ENST00000578830	CNTNAP1	P78357	1384 aa		11.79	□□□□□ -0.52
NUP85-208	ENST00000578830	LAMB4	A4D0S4	1761 aa		11.78	□□□□□ -0.52
NUP85-208	ENST00000578830	IQCA1L	A6NCM1	817 aa		11.78	□□□□□ -0.52
NUP85-208	ENST00000578830	CAMTA2	O94983	1202 aa		11.78	□□□□□ -0.52
NUP85-208	ENST00000578830	GAS2L2	Q8NHY3	880 aa		11.78	□□□□□ -0.52
NUP85-208	ENST00000578830	MASTL	Q96GX5	879 aa		11.78	□□□□□ -0.52
NUP85-208	ENST00000578830	FMNL2	Q96PY5	1086 aa		11.78	□□□□□ -0.52
NUP85-208	ENST00000578830	DLG5	Q8TDM6	1919 aa		11.78	□□□□□ -0.52
NUP85-208	ENST00000578830	NPHP1	O15259	732 aa		11.77	□□□□□ -0.53
NUP85-208	ENST00000578830	A1BG	P04217	495 aa		11.77	□□□□□ -0.53
NUP85-208	ENST00000578830	LDHD	Q86WU2	507 aa		11.77	□□□□□ -0.53
NUP85-208	ENST00000578830	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.77	□□□□□ -0.53
NUP85-208	ENST00000578830	PASK	Q96RG2	1323 aa		11.77	□□□□□ -0.53
NUP85-208	ENST00000578830	CEMIP	Q8WUJ3	1361 aa		11.77	□□□□□ -0.53
NUP85-208	ENST00000578830	PER1	O15534	1290 aa	Predicted RBP	11.76	□□□□□ -0.53
NUP85-208	ENST00000578830	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.76	□□□□□ -0.53
NUP85-208	ENST00000578830	PRDM10	Q9NQV6	1147 aa		11.76	□□□□□ -0.53
NUP85-208	ENST00000578830	FOXN1	O15353	648 aa		11.75	□□□□□ -0.53
NUP85-208	ENST00000578830	SEC24B	O95487	1268 aa		11.75	□□□□□ -0.53
NUP85-208	ENST00000578830	CCDC93	Q567U6	631 aa		11.75	□□□□□ -0.53
NUP85-208	ENST00000578830	CC2D1B	Q5T0F9	858 aa	Known RBP	11.75	□□□□□ -0.53
NUP85-208	ENST00000578830	CLEC4G	Q6UXB4	293 aa		11.75	□□□□□ -0.53
NUP85-208	ENST00000578830	DZIP3	Q86Y13	1208 aa	Known RBP	11.75	□□□□□ -0.53
NUP85-208	ENST00000578830	C7orf43	Q8WVR3	580 aa		11.75	□□□□□ -0.53
NUP85-208	ENST00000578830	TMEM88B	A6NKF7	163 aa		11.74	□□□□□ -0.53
NUP85-208	ENST00000578830	BTBD11	A6QL63	1104 aa		11.74	□□□□□ -0.53
NUP85-208	ENST00000578830	U2SURP	O15042	1029 aa	Known RBP	11.74	□□□□□ -0.53
NUP85-208	ENST00000578830	NPR1	P16066	1061 aa		11.74	□□□□□ -0.53
NUP85-208	ENST00000578830	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.74	□□□□□ -0.53
NUP85-208	ENST00000578830	ZNF652	Q9Y2D9	606 aa		11.74	□□□□□ -0.53
NUP85-208	ENST00000578830	NPC1L1	Q9UHC9	1359 aa		11.74	□□□□□ -0.53
NUP85-208	ENST00000578830	KLRG2	A4D1S0	409 aa	Predicted RBP	11.73	□□□□□ -0.53
NUP85-208	ENST00000578830	RGL2	O15211	777 aa		11.73	□□□□□ -0.53
NUP85-208	ENST00000578830	ITGBL1	O95965	494 aa	Predicted RBP	11.73	□□□□□ -0.53
NUP85-208	ENST00000578830	CTCF	P49711	727 aa	Predicted RBP	11.73	□□□□□ -0.53
NUP85-208	ENST00000578830	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
NUP85-208	ENST00000578830	IER5L	Q5T953	404 aa		11.73	□□□□□ -0.53
NUP85-208	ENST00000578830	AIDA	Q96BJ3	306 aa		11.73	□□□□□ -0.53
NUP85-208	ENST00000578830	USP16	Q9Y5T5	823 aa		11.73	□□□□□ -0.53
NUP85-208	ENST00000578830	ZNF541	Q9H0D2	1346 aa		11.72	□□□□□ -0.53
NUP85-208	ENST00000578830	KCNQ3	O43525	872 aa		11.72	□□□□□ -0.53
NUP85-208	ENST00000578830	VEGFB	P49765	207 aa		11.72	□□□□□ -0.53
NUP85-208	ENST00000578830	PSEN1	P49768	467 aa		11.72	□□□□□ -0.53
NUP85-208	ENST00000578830	RTKN2	Q8IZC4	609 aa		11.72	□□□□□ -0.53
NUP85-208	ENST00000578830	HACL1	Q9UJ83	578 aa		11.72	□□□□□ -0.53
NUP85-208	ENST00000578830	KDM3B	Q7LBC6	1761 aa		11.72	□□□□□ -0.53
NUP85-208	ENST00000578830	THSD7B	Q9C0I4	1608 aa		11.71	□□□□□ -0.53
NUP85-208	ENST00000578830	SNRPA1	P09661	255 aa	Known RBP	11.71	□□□□□ -0.53
NUP85-208	ENST00000578830	EAPP	Q56P03	285 aa	Predicted RBP	11.71	□□□□□ -0.53
NUP85-208	ENST00000578830	TPTE2	Q6XPS3	522 aa		11.71	□□□□□ -0.53
NUP85-208	ENST00000578830	PNMA8A	Q86V59	439 aa	Predicted RBP	11.71	□□□□□ -0.53
NUP85-208	ENST00000578830	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.71	□□□□□ -0.53
NUP85-208	ENST00000578830	WBP1L	Q9NX94	342 aa		11.71	□□□□□ -0.53
NUP85-208	ENST00000578830	LTBP1	Q14766	1721 aa		11.71	□□□□□ -0.54
NUP85-208	ENST00000578830	FZD9	O00144	591 aa		11.7	□□□□□ -0.54
NUP85-208	ENST00000578830	ALDH1B1	P30837	517 aa		11.7	□□□□□ -0.54
NUP85-208	ENST00000578830	EPHX2	P34913	555 aa		11.7	□□□□□ -0.54
NUP85-208	ENST00000578830	PIP4K2A	P48426	406 aa	Predicted RBP	11.7	□□□□□ -0.54
NUP85-208	ENST00000578830	PHACTR3	Q96KR7	559 aa		11.7	□□□□□ -0.54
NUP85-208	ENST00000578830	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
NUP85-208	ENST00000578830	CASP8AP2	Q9UKL3	1982 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	PRAMEF22	A3QJZ6	481 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	RASSF10	A6NK89	507 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	PRKAR2B	P31323	418 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	IARS	P41252	1262 aa	Known RBP	11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	DEFB115	Q30KQ5	88 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	OLFM4	Q6UX06	510 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	CNTROB	Q8N137	903 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	GPC2	Q8N158	579 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	RSPH6A	Q9H0K4	717 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	SNED1	Q8TER0	1413 aa		11.69	□□□□□ -0.54
NUP85-208	ENST00000578830	POLR2A	P24928	1970 aa	Known RBP	11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	TNRC18	O15417	2968 aa	Predicted RBP	11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	RNF123	Q5XPI4	1314 aa		11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	NBPF26	B4DH59	902 aa		11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	LBX1	P52954	281 aa		11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	IRX5	P78411	483 aa	Predicted RBP	11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	NBPF10	Q6P3W6	841 aa	Known RBP	11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	SYNE4	Q8N205	404 aa		11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	NBPF15	Q8N660	670 aa		11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	PSMD1	Q99460	953 aa		11.68	□□□□□ -0.54
NUP85-208	ENST00000578830	LAMB2	P55268	1798 aa		11.67	□□□□□ -0.54
NUP85-208	ENST00000578830	ANKRD36C	Q5JPF3	1778 aa		11.67	□□□□□ -0.54
NUP85-208	ENST00000578830	WDR33	Q9C0J8	1336 aa	Known RBP	11.67	□□□□□ -0.54
NUP85-208	ENST00000578830	MAP2K1	Q02750	393 aa	Predicted RBP	11.67	□□□□□ -0.54
NUP85-208	ENST00000578830	PDAP1	Q13442	181 aa	Known RBP	11.67	□□□□□ -0.54
NUP85-208	ENST00000578830	MAP1S	Q66K74	1059 aa	Predicted RBP	11.67	□□□□□ -0.54
NUP85-208	ENST00000578830	RTF1	Q92541	710 aa	Known RBP	11.67	□□□□□ -0.54
NUP85-208	ENST00000578830	CFAP53	Q96M91	514 aa		11.67	□□□□□ -0.54
NUP85-208	ENST00000578830	COL4A5	P29400	1685 aa		11.67	□□□□□ -0.54
NUP85-208	ENST00000578830	FAM177B	A6PVY3	158 aa		11.66	□□□□□ -0.54
NUP85-208	ENST00000578830	HSPA8	P11142	646 aa	Known RBP	11.66	□□□□□ -0.54
NUP85-208	ENST00000578830	GTF2E1	P29083	439 aa	Predicted RBP	11.66	□□□□□ -0.54
NUP85-208	ENST00000578830	CRY2	Q49AN0	593 aa		11.66	□□□□□ -0.54
NUP85-208	ENST00000578830	CC2D2B	Q6DHV5	1058 aa		11.66	□□□□□ -0.54
NUP85-208	ENST00000578830	MCM10	Q7L590	875 aa		11.66	□□□□□ -0.54
NUP85-208	ENST00000578830	JDP2	Q8WYK2	163 aa		11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms