RNA–Protein interactions for RNA: ENST00000576708.5

NUP88-212, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-212ENST00000576708 USP47Q96K76 1375 aa8.71□□□□□ -1.02
NUP88-212ENST00000576708 RGPD3A6NKT7 1758 aaPredicted RBP8.71□□□□□ -1.02
NUP88-212ENST00000576708 RGPD4Q7Z3J3 1758 aa8.71□□□□□ -1.02
NUP88-212ENST00000576708 NHSQ6T4R5 1651 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 FYB1O15117 783 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 ZPR1O75312 459 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 HOXC9P31274 260 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 AMPHP49418 695 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 MTMR2Q13614 643 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 SLC15A2Q16348 729 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 TUSC1Q2TAM9 212 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 BRICD5Q6PL45 260 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 IL21Q9HBE4 155 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 STK32BQ9NY57 414 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 GTF3C3Q9Y5Q9 886 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 CASZ1Q86V15 1759 aa8.7□□□□□ -1.02
NUP88-212ENST00000576708 FMNL1O95466 1100 aaPredicted RBP8.69□□□□□ -1.02
NUP88-212ENST00000576708 KCNQ4P56696 695 aa8.69□□□□□ -1.02
NUP88-212ENST00000576708 TMF1P82094 1093 aa8.69□□□□□ -1.02
NUP88-212ENST00000576708 Q3C1V9 767 aa8.69□□□□□ -1.02
NUP88-212ENST00000576708 PRPF38BQ5VTL8 546 aaKnown RBP8.69□□□□□ -1.02
NUP88-212ENST00000576708 USHBP1Q8N6Y0 703 aa8.69□□□□□ -1.02
NUP88-212ENST00000576708 NKX2-3Q8TAU0 364 aa8.69□□□□□ -1.02
NUP88-212ENST00000576708 TSC1Q92574 1164 aa8.69□□□□□ -1.02
NUP88-212ENST00000576708 THAP11Q96EK4 314 aa8.69□□□□□ -1.02
NUP88-212ENST00000576708 ANKRD36BQ8N2N9 1353 aa8.69□□□□□ -1.02
NUP88-212ENST00000576708 NINLQ9Y2I6 1382 aa8.69□□□□□ -1.02
NUP88-212ENST00000576708 RFC5P40937 340 aa8.68□□□□□ -1.02
NUP88-212ENST00000576708 ZNF827Q17R98 1081 aa8.68□□□□□ -1.02
NUP88-212ENST00000576708 NBPF6Q5VWK0 638 aa8.68□□□□□ -1.02
NUP88-212ENST00000576708 NBPF4Q96M43 638 aa8.68□□□□□ -1.02
NUP88-212ENST00000576708 CARD14Q9BXL6 1004 aa8.68□□□□□ -1.02
NUP88-212ENST00000576708 PCGF6Q9BYE7 350 aa8.68□□□□□ -1.02
NUP88-212ENST00000576708 LRRC4BQ9NT99 713 aa8.68□□□□□ -1.02
NUP88-212ENST00000576708 RGPD2P0DJD1 1756 aa8.68□□□□□ -1.02
NUP88-212ENST00000576708 CFAP99D6REC4 459 aa8.67□□□□□ -1.02
NUP88-212ENST00000576708 BTAF1O14981 1849 aa8.67□□□□□ -1.02
NUP88-212ENST00000576708 MEGF6O75095 1541 aa8.67□□□□□ -1.02
NUP88-212ENST00000576708 MYOM1P52179 1685 aa8.67□□□□□ -1.02
NUP88-212ENST00000576708 PPP2R2DQ66LE6 453 aa8.67□□□□□ -1.02
NUP88-212ENST00000576708 PRR7Q8TB68 274 aa8.67□□□□□ -1.02
NUP88-212ENST00000576708 SYTL4Q96C24 671 aaPredicted RBP8.67□□□□□ -1.02
NUP88-212ENST00000576708 SPSB2Q99619 263 aa8.67□□□□□ -1.02
NUP88-212ENST00000576708 FAM208AQ9UK61 1670 aaKnown RBP8.67□□□□□ -1.02
NUP88-212ENST00000576708 HSP90AB2PQ58FF8 381 aa8.66□□□□□ -1.02
NUP88-212ENST00000576708 RETREG3Q86VR2 466 aa8.66□□□□□ -1.02
NUP88-212ENST00000576708 ZCRB1Q8TBF4 217 aaKnown RBP8.66□□□□□ -1.02
NUP88-212ENST00000576708 USB1Q9BQ65 265 aaKnown RBP8.66□□□□□ -1.02
NUP88-212ENST00000576708 PAPPAQ13219 1627 aa8.65□□□□□ -1.02
NUP88-212ENST00000576708 NSD2O96028 1365 aa8.65□□□□□ -1.02
NUP88-212ENST00000576708 AP1G2O75843 785 aa8.65□□□□□ -1.02
NUP88-212ENST00000576708 YY1P25490 414 aa8.65□□□□□ -1.02
NUP88-212ENST00000576708 KCNC4Q03721 635 aa8.65□□□□□ -1.02
NUP88-212ENST00000576708 FAM160A2Q8N612 972 aaPredicted RBP8.65□□□□□ -1.02
NUP88-212ENST00000576708 FHDC1Q9C0D6 1143 aaPredicted RBP8.65□□□□□ -1.02
NUP88-212ENST00000576708 PRDM9Q9NQV7 894 aa8.65□□□□□ -1.02
NUP88-212ENST00000576708 SALL2Q9Y467 1007 aaPredicted RBP8.65□□□□□ -1.02
NUP88-212ENST00000576708 NSD3Q9BZ95 1437 aa8.64□□□□□ -1.03
NUP88-212ENST00000576708 DOT1LQ8TEK3 1739 aa8.64□□□□□ -1.03
NUP88-212ENST00000576708 SHANK3Q9BYB0 1731 aa8.64□□□□□ -1.03
NUP88-212ENST00000576708 SPDYE5A6NIY4 337 aa8.64□□□□□ -1.03
NUP88-212ENST00000576708 POLR3GLQ9BT43 218 aa8.64□□□□□ -1.03
NUP88-212ENST00000576708 MTFR1LQ9H019 292 aa8.64□□□□□ -1.03
NUP88-212ENST00000576708 EMILIN1Q9Y6C2 1016 aa8.64□□□□□ -1.03
NUP88-212ENST00000576708 RTL1A6NKG5 1358 aa8.63□□□□□ -1.03
NUP88-212ENST00000576708 INSRP06213 1382 aa8.63□□□□□ -1.03
NUP88-212ENST00000576708 PPM1GO15355 546 aaPredicted RBP8.63□□□□□ -1.03
NUP88-212ENST00000576708 ITGBL1O95965 494 aaPredicted RBP8.63□□□□□ -1.03
NUP88-212ENST00000576708 ADH1BP00325 375 aa8.63□□□□□ -1.03
NUP88-212ENST00000576708 SYT17Q9BSW7 474 aa8.63□□□□□ -1.03
NUP88-212ENST00000576708 KIF20BQ96Q89 1820 aa8.63□□□□□ -1.03
NUP88-212ENST00000576708 KAT6BQ8WYB5 2073 aa8.63□□□□□ -1.03
NUP88-212ENST00000576708 PNPLA7Q6ZV29 1317 aa8.62□□□□□ -1.03
NUP88-212ENST00000576708 TATP17735 454 aaPredicted RBP8.62□□□□□ -1.03
NUP88-212ENST00000576708 CTDSPL2Q05D32 466 aa8.62□□□□□ -1.03
NUP88-212ENST00000576708 CDCA8Q53HL2 280 aa8.62□□□□□ -1.03
NUP88-212ENST00000576708 SLC27A3Q5K4L6 730 aa8.62□□□□□ -1.03
NUP88-212ENST00000576708 RAPGEF4Q8WZA2 1011 aa8.62□□□□□ -1.03
NUP88-212ENST00000576708 ARXQ96QS3 562 aa8.62□□□□□ -1.03
NUP88-212ENST00000576708 FLT4P35916 1363 aa8.61□□□□□ -1.03
NUP88-212ENST00000576708 S1PR4O95977 384 aa8.61□□□□□ -1.03
NUP88-212ENST00000576708 SLC6A16Q9GZN6 736 aa8.61□□□□□ -1.03
NUP88-212ENST00000576708 TFCP2L1Q9NZI6 479 aa8.61□□□□□ -1.03
NUP88-212ENST00000576708 CCNL1Q9UK58 526 aaPredicted RBP8.61□□□□□ -1.03
NUP88-212ENST00000576708 SMG6Q86US8 1419 aaKnown RBP8.61□□□□□ -1.03
NUP88-212ENST00000576708 CYP27B1O15528 508 aa8.6□□□□□ -1.03
NUP88-212ENST00000576708 PER1O15534 1290 aaPredicted RBP8.6□□□□□ -1.03
NUP88-212ENST00000576708 TNNT2P45379 298 aaPredicted RBP8.6□□□□□ -1.03
NUP88-212ENST00000576708 TMEM259Q4ZIN3 620 aa8.6□□□□□ -1.03
NUP88-212ENST00000576708 MPRIPQ6WCQ1 1025 aa8.6□□□□□ -1.03
NUP88-212ENST00000576708 HELBQ8NG08 1087 aaPredicted RBP8.6□□□□□ -1.03
NUP88-212ENST00000576708 TIMELESSQ9UNS1 1208 aa8.6□□□□□ -1.03
NUP88-212ENST00000576708 TUBGCP6Q96RT7 1819 aa8.59□□□□□ -1.03
NUP88-212ENST00000576708 USP17L8P0C7I0 530 aa8.59□□□□□ -1.03
NUP88-212ENST00000576708 HSPA5P11021 654 aaKnown RBP8.59□□□□□ -1.03
NUP88-212ENST00000576708 MSS51Q4VC12 460 aa8.59□□□□□ -1.03
NUP88-212ENST00000576708 SMIM5Q71RC9 77 aa8.59□□□□□ -1.03
NUP88-212ENST00000576708 COL23A1Q86Y22 540 aaPredicted RBP8.59□□□□□ -1.03
NUP88-212ENST00000576708 LRRN4Q8WUT4 740 aa8.59□□□□□ -1.03
NUP88-212ENST00000576708 SNRKQ9NRH2 765 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms