RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 FMNL2Q96PY5 1086 aa18.58■□□□□ 0.56
CIITA-211ENST00000576601 GJA3Q9Y6H8 435 aa18.58■□□□□ 0.56
CIITA-211ENST00000576601 PRAMEF22A3QJZ6 481 aa18.57■□□□□ 0.56
CIITA-211ENST00000576601 LAMB2P55268 1798 aa18.56■□□□□ 0.56
CIITA-211ENST00000576601 CA12O43570 354 aa18.56■□□□□ 0.56
CIITA-211ENST00000576601 TEFQ10587 303 aa18.56■□□□□ 0.56
CIITA-211ENST00000576601 CRY2Q49AN0 593 aa18.56■□□□□ 0.56
CIITA-211ENST00000576601 USP16Q9Y5T5 823 aa18.56■□□□□ 0.56
CIITA-211ENST00000576601 RIC1Q4ADV7 1423 aa18.56■□□□□ 0.56
CIITA-211ENST00000576601 LMOD1P29536 600 aaPredicted RBP18.55■□□□□ 0.56
CIITA-211ENST00000576601 BRPF1P55201 1214 aaPredicted RBP18.55■□□□□ 0.56
CIITA-211ENST00000576601 DGKZQ13574 1117 aa18.55■□□□□ 0.56
CIITA-211ENST00000576601 USP50Q70EL3 339 aaPredicted RBP18.55■□□□□ 0.56
CIITA-211ENST00000576601 JDP2Q8WYK2 163 aa18.55■□□□□ 0.56
CIITA-211ENST00000576601 EIF6P56537 245 aaKnown RBP18.54■□□□□ 0.56
CIITA-211ENST00000576601 NIP7Q9Y221 180 aaKnown RBP eCLIP18.54■□□□□ 0.56
CIITA-211ENST00000576601 GNAT3A8MTJ3 354 aa18.53■□□□□ 0.56
CIITA-211ENST00000576601 NBPF26B4DH59 902 aa18.53■□□□□ 0.56
CIITA-211ENST00000576601 DIAPH1O60610 1272 aaKnown RBP18.53■□□□□ 0.56
CIITA-211ENST00000576601 ALDH1B1P30837 517 aa18.53■□□□□ 0.56
CIITA-211ENST00000576601 NBPF10Q6P3W6 841 aaKnown RBP18.53■□□□□ 0.56
CIITA-211ENST00000576601 TPTE2Q6XPS3 522 aa18.53■□□□□ 0.56
CIITA-211ENST00000576601 NBPF15Q8N660 670 aa18.53■□□□□ 0.56
CIITA-211ENST00000576601 HHIPL1Q96JK4 782 aa18.53■□□□□ 0.56
CIITA-211ENST00000576601 ZNF652Q9Y2D9 606 aa18.53■□□□□ 0.56
CIITA-211ENST00000576601 RGL2O15211 777 aa18.52■□□□□ 0.56
CIITA-211ENST00000576601 NPM2Q86SE8 214 aaKnown RBP18.52■□□□□ 0.56
CIITA-211ENST00000576601 ZIC5Q96T25 663 aa18.52■□□□□ 0.56
CIITA-211ENST00000576601 NPC1L1Q9UHC9 1359 aa18.52■□□□□ 0.55
CIITA-211ENST00000576601 FAM177BA6PVY3 158 aa18.51■□□□□ 0.55
CIITA-211ENST00000576601 CELF2O95319 508 aaKnown RBP18.51■□□□□ 0.55
CIITA-211ENST00000576601 HLFQ16534 295 aa18.51■□□□□ 0.55
CIITA-211ENST00000576601 CIAPIN1Q6FI81 312 aa18.51■□□□□ 0.55
CIITA-211ENST00000576601 GPRC5DQ9NZD1 345 aa18.51■□□□□ 0.55
CIITA-211ENST00000576601 KDM3BQ7LBC6 1761 aa18.5■□□□□ 0.55
CIITA-211ENST00000576601 TAF1P21675 1872 aa18.5■□□□□ 0.55
CIITA-211ENST00000576601 GLIS2Q9BZE0 524 aaPredicted RBP18.5■□□□□ 0.55
CIITA-211ENST00000576601 SOX10P56693 466 aa18.49■□□□□ 0.55
CIITA-211ENST00000576601 LARGE2Q8N3Y3 721 aa18.49■□□□□ 0.55
CIITA-211ENST00000576601 GAS2L2Q8NHY3 880 aa18.49■□□□□ 0.55
CIITA-211ENST00000576601 ADARB2Q9NS39 739 aaKnown RBP18.49■□□□□ 0.55
CIITA-211ENST00000576601 DLG5Q8TDM6 1919 aa18.49■□□□□ 0.55
CIITA-211ENST00000576601 SZT2Q5T011 3432 aa18.48■□□□□ 0.55
CIITA-211ENST00000576601 ANKRD36CQ5JPF3 1778 aa18.48■□□□□ 0.55
CIITA-211ENST00000576601 BTBD11A6QL63 1104 aa18.48■□□□□ 0.55
CIITA-211ENST00000576601 HOXA10P31260 410 aaPredicted RBP18.48■□□□□ 0.55
CIITA-211ENST00000576601 CC2D2BQ6DHV5 1058 aa18.48■□□□□ 0.55
CIITA-211ENST00000576601 PGAP2Q9UHJ9 254 aa18.48■□□□□ 0.55
CIITA-211ENST00000576601 U2SURPO15042 1029 aaKnown RBP18.47■□□□□ 0.55
CIITA-211ENST00000576601 NUTM1Q86Y26 1132 aa18.47■□□□□ 0.55
CIITA-211ENST00000576601 LRRC37AA6NMS7 1700 aa18.46■□□□□ 0.55
CIITA-211ENST00000576601 PRPF38BQ5VTL8 546 aaKnown RBP18.46■□□□□ 0.55
CIITA-211ENST00000576601 DUOX1Q9NRD9 1551 aa18.46■□□□□ 0.55
CIITA-211ENST00000576601 IBTKQ9P2D0 1353 aaPredicted RBP18.45■□□□□ 0.54
CIITA-211ENST00000576601 HIRAP54198 1017 aaPredicted RBP18.45■□□□□ 0.54
CIITA-211ENST00000576601 SNRPA1P09661 255 aaKnown RBP18.44■□□□□ 0.54
CIITA-211ENST00000576601 GMPSP49915 693 aaPredicted RBP18.44■□□□□ 0.54
CIITA-211ENST00000576601 CXCL9Q07325 125 aa18.44■□□□□ 0.54
CIITA-211ENST00000576601 NOGQ13253 232 aa18.44■□□□□ 0.54
CIITA-211ENST00000576601 AOC3Q16853 763 aa18.44■□□□□ 0.54
CIITA-211ENST00000576601 C3orf67Q6ZVT6 689 aa18.44■□□□□ 0.54
CIITA-211ENST00000576601 NIM1KQ8IY84 436 aa18.44■□□□□ 0.54
CIITA-211ENST00000576601 PHACTR3Q96KR7 559 aa18.44■□□□□ 0.54
CIITA-211ENST00000576601 UBN2Q6ZU65 1347 aa18.44■□□□□ 0.54
CIITA-211ENST00000576601 FAM155AB1AL88 458 aaPredicted RBP18.43■□□□□ 0.54
CIITA-211ENST00000576601 PPEF1O14829 653 aaPredicted RBP18.43■□□□□ 0.54
CIITA-211ENST00000576601 PPIP5K2O43314 1243 aa18.43■□□□□ 0.54
CIITA-211ENST00000576601 TRPM4Q8TD43 1214 aa18.43■□□□□ 0.54
CIITA-211ENST00000576601 GRIPAP1Q4V328 841 aa18.42■□□□□ 0.54
CIITA-211ENST00000576601 DLK2Q6UY11 383 aa18.42■□□□□ 0.54
CIITA-211ENST00000576601 ZNF408Q9H9D4 720 aa18.42■□□□□ 0.54
CIITA-211ENST00000576601 CDHR2Q9BYE9 1310 aa18.42■□□□□ 0.54
CIITA-211ENST00000576601 SHTN1A0MZ66 631 aa18.41■□□□□ 0.54
CIITA-211ENST00000576601 GTF2E1P29083 439 aaPredicted RBP18.41■□□□□ 0.54
CIITA-211ENST00000576601 RPGRQ92834 1020 aaKnown RBP18.41■□□□□ 0.54
CIITA-211ENST00000576601 CRAMP1Q96RY5 1269 aa18.41■□□□□ 0.54
CIITA-211ENST00000576601 DDX60Q8IY21 1712 aaKnown RBP18.4■□□□□ 0.54
CIITA-211ENST00000576601 TCERG1O14776 1098 aaKnown RBP18.4■□□□□ 0.54
CIITA-211ENST00000576601 NYXQ9GZU5 481 aa18.4■□□□□ 0.54
CIITA-211ENST00000576601 RSPH6AQ9H0K4 717 aa18.4■□□□□ 0.54
CIITA-211ENST00000576601 SAGE1Q9NXZ1 904 aa18.4■□□□□ 0.54
CIITA-211ENST00000576601 SCN9AQ15858 1988 aa18.4■□□□□ 0.54
CIITA-211ENST00000576601 PRKAR2BP31323 418 aa18.39■□□□□ 0.53
CIITA-211ENST00000576601 HUNKP57058 714 aa18.39■□□□□ 0.53
CIITA-211ENST00000576601 ZC3H15Q8WU90 426 aaKnown RBP18.39■□□□□ 0.53
CIITA-211ENST00000576601 ZNRF3Q9ULT6 936 aa18.39■□□□□ 0.53
CIITA-211ENST00000576601 A0A0C4DFX4 3053 aa18.38■□□□□ 0.53
CIITA-211ENST00000576601 RTFDC1Q9BY42 306 aaPredicted RBP18.38■□□□□ 0.53
CIITA-211ENST00000576601 RANBP2P49792 3224 aaKnown RBP18.38■□□□□ 0.53
CIITA-211ENST00000576601 CEP290O15078 2479 aa18.38■□□□□ 0.53
CIITA-211ENST00000576601 NTSR2O95665 410 aa18.37■□□□□ 0.53
CIITA-211ENST00000576601 CDC37L1Q7L3B6 337 aa18.37■□□□□ 0.53
CIITA-211ENST00000576601 MCM10Q7L590 875 aa18.37■□□□□ 0.53
CIITA-211ENST00000576601 ATP6V0A2Q9Y487 856 aa18.37■□□□□ 0.53
CIITA-211ENST00000576601 MAP3K15Q6ZN16 1313 aa18.37■□□□□ 0.53
CIITA-211ENST00000576601 ERVV-1B6SEH8 477 aa18.36■□□□□ 0.53
CIITA-211ENST00000576601 GPTP24298 496 aa18.36■□□□□ 0.53
CIITA-211ENST00000576601 PPP2R1AP30153 589 aa18.36■□□□□ 0.53
CIITA-211ENST00000576601 PSME4Q14997 1843 aa18.36■□□□□ 0.53
CIITA-211ENST00000576601 SUSD4Q5VX71 490 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms