RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CAVIN1Q6NZI2 390 aaKnown RBP12.16□□□□□ -0.46
VPS53-220ENST00000576149 KLHDC4Q8TBB5 520 aa12.16□□□□□ -0.46
VPS53-220ENST00000576149 GPT2Q8TD30 523 aa12.16□□□□□ -0.46
VPS53-220ENST00000576149 CHAMP1Q96JM3 812 aa12.16□□□□□ -0.46
VPS53-220ENST00000576149 SIL1Q9H173 461 aa12.16□□□□□ -0.46
VPS53-220ENST00000576149 COPRSQ9NQ92 184 aa12.16□□□□□ -0.46
VPS53-220ENST00000576149 COL15A1P39059 1388 aa12.15□□□□□ -0.46
VPS53-220ENST00000576149 HIP1O00291 1037 aa12.15□□□□□ -0.46
VPS53-220ENST00000576149 NCLP19338 710 aaKnown RBP12.15□□□□□ -0.46
VPS53-220ENST00000576149 PIP4K2AP48426 406 aaPredicted RBP12.15□□□□□ -0.46
VPS53-220ENST00000576149 AK2P54819 239 aa12.15□□□□□ -0.46
VPS53-220ENST00000576149 FOXD4L5Q5VV16 416 aaPredicted RBP12.15□□□□□ -0.46
VPS53-220ENST00000576149 BRINP3Q76B58 766 aa12.15□□□□□ -0.46
VPS53-220ENST00000576149 FOXD4L4Q8WXT5 416 aaPredicted RBP12.15□□□□□ -0.46
VPS53-220ENST00000576149 TLR7Q9NYK1 1049 aaKnown RBP12.15□□□□□ -0.46
VPS53-220ENST00000576149 ZSCAN23Q3MJ62 389 aa12.15□□□□□ -0.47
VPS53-220ENST00000576149 SNRKQ9NRH2 765 aa12.15□□□□□ -0.47
VPS53-220ENST00000576149 PARP4Q9UKK3 1724 aaKnown RBP12.14□□□□□ -0.47
VPS53-220ENST00000576149 GLI3P10071 1580 aa12.14□□□□□ -0.47
VPS53-220ENST00000576149 RFX5P48382 616 aaPredicted RBP12.14□□□□□ -0.47
VPS53-220ENST00000576149 NECTIN1Q15223 517 aa12.14□□□□□ -0.47
VPS53-220ENST00000576149 RABL6Q3YEC7 729 aaPredicted RBP12.14□□□□□ -0.47
VPS53-220ENST00000576149 RUFY3Q7L099 469 aa12.14□□□□□ -0.47
VPS53-220ENST00000576149 TM6SF1Q9BZW5 370 aa12.14□□□□□ -0.47
VPS53-220ENST00000576149 RRAGDQ9NQL2 400 aaPredicted RBP12.14□□□□□ -0.47
VPS53-220ENST00000576149 LIMCH1Q9UPQ0 1083 aa12.14□□□□□ -0.47
VPS53-220ENST00000576149 CCDC171Q6TFL3 1326 aa12.14□□□□□ -0.47
VPS53-220ENST00000576149 WDR17Q8IZU2 1322 aa12.14□□□□□ -0.47
VPS53-220ENST00000576149 HSPA2P54652 639 aa12.13□□□□□ -0.47
VPS53-220ENST00000576149 PLBD2Q8NHP8 589 aa12.13□□□□□ -0.47
VPS53-220ENST00000576149 WDR33Q9C0J8 1336 aaKnown RBP12.13□□□□□ -0.47
VPS53-220ENST00000576149 CASTP20810 708 aaKnown RBP12.13□□□□□ -0.47
VPS53-220ENST00000576149 PTPN12Q05209 780 aaKnown RBP12.13□□□□□ -0.47
VPS53-220ENST00000576149 NMIQ13287 307 aaPredicted RBP12.13□□□□□ -0.47
VPS53-220ENST00000576149 PRPF40BQ6NWY9 871 aaKnown RBP12.13□□□□□ -0.47
VPS53-220ENST00000576149 UBE3BQ7Z3V4 1068 aa12.13□□□□□ -0.47
VPS53-220ENST00000576149 FAM227BQ96M60 508 aa12.13□□□□□ -0.47
VPS53-220ENST00000576149 BOLA2Q9H3K6 86 aa12.13□□□□□ -0.47
VPS53-220ENST00000576149 ZSWIM6Q9HCJ5 1215 aa12.13□□□□□ -0.47
VPS53-220ENST00000576149 ERBB4Q15303 1308 aa12.13□□□□□ -0.47
VPS53-220ENST00000576149 PCDH11XQ9BZA7 1347 aa12.13□□□□□ -0.47
VPS53-220ENST00000576149 PCDH11YQ9BZA8 1340 aa12.13□□□□□ -0.47
VPS53-220ENST00000576149 CASP7P55210 303 aa12.12□□□□□ -0.47
VPS53-220ENST00000576149 VPS53Q5VIR6 699 aa12.12□□□□□ -0.47
VPS53-220ENST00000576149 ZCRB1Q8TBF4 217 aaKnown RBP12.12□□□□□ -0.47
VPS53-220ENST00000576149 JARID2Q92833 1246 aaPredicted RBP12.12□□□□□ -0.47
VPS53-220ENST00000576149 MAP4K1Q92918 833 aa12.12□□□□□ -0.47
VPS53-220ENST00000576149 PRDM11Q9NQV5 511 aa12.12□□□□□ -0.47
VPS53-220ENST00000576149 RPAP1Q9BWH6 1393 aaPredicted RBP12.12□□□□□ -0.47
VPS53-220ENST00000576149 LAMB4A4D0S4 1761 aa12.12□□□□□ -0.47
VPS53-220ENST00000576149 ATP5J2-PTCD1G3V325 749 aa12.12□□□□□ -0.47
VPS53-220ENST00000576149 PTCD1O75127 700 aaKnown RBP12.12□□□□□ -0.47
VPS53-220ENST00000576149 MBD3O95983 291 aa12.12□□□□□ -0.47
VPS53-220ENST00000576149 ADCK5Q3MIX3 580 aa12.12□□□□□ -0.47
VPS53-220ENST00000576149 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.12□□□□□ -0.47
VPS53-220ENST00000576149 JAKMIP1Q96N16 626 aaKnown RBP12.12□□□□□ -0.47
VPS53-220ENST00000576149 XIRP1Q702N8 1843 aaKnown RBP12.12□□□□□ -0.47
VPS53-220ENST00000576149 ARFGEF2Q9Y6D5 1785 aa12.12□□□□□ -0.47
VPS53-220ENST00000576149 A0A087WZG4 1122 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 NBPF26B4DH59 902 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 ERVV-2B6SEH9 535 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 CPA1P15085 419 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 NASPP49321 788 aaPredicted RBP12.11□□□□□ -0.47
VPS53-220ENST00000576149 NBPF14Q5TI25 921 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 NBPF10Q6P3W6 841 aaKnown RBP12.11□□□□□ -0.47
VPS53-220ENST00000576149 TOM1L2Q6ZVM7 507 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 NBPF15Q8N660 670 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.11□□□□□ -0.47
VPS53-220ENST00000576149 RBM8AQ9Y5S9 174 aaKnown RBP12.11□□□□□ -0.47
VPS53-220ENST00000576149 SOS2Q07890 1332 aaPredicted RBP12.11□□□□□ -0.47
VPS53-220ENST00000576149 ZKSCAN1P17029 563 aaPredicted RBP12.11□□□□□ -0.47
VPS53-220ENST00000576149 NKX1-1Q15270 411 aaPredicted RBP12.11□□□□□ -0.47
VPS53-220ENST00000576149 FSD1Q9BTV5 496 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 PDRG1Q9NUG6 133 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 TMEM63CQ9P1W3 806 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 RBM27Q9P2N5 1060 aaKnown RBP12.11□□□□□ -0.47
VPS53-220ENST00000576149 NSFL1CQ9UNZ2 370 aaKnown RBP12.11□□□□□ -0.47
VPS53-220ENST00000576149 CYP46A1Q9Y6A2 500 aa12.11□□□□□ -0.47
VPS53-220ENST00000576149 A0A0D9SFI3 127 aa12.1□□□□□ -0.47
VPS53-220ENST00000576149 ATP5JP18859 108 aa12.1□□□□□ -0.47
VPS53-220ENST00000576149 TFCP2Q12800 502 aa12.1□□□□□ -0.47
VPS53-220ENST00000576149 TNNI3KQ59H18 835 aa12.1□□□□□ -0.47
VPS53-220ENST00000576149 CREB3L3Q68CJ9 461 aa12.1□□□□□ -0.47
VPS53-220ENST00000576149 LARP6Q9BRS8 491 aaKnown RBP12.1□□□□□ -0.47
VPS53-220ENST00000576149 DBNLQ9UJU6 430 aaKnown RBP12.1□□□□□ -0.47
VPS53-220ENST00000576149 FPGT-TNNI3KV9GXZ4 949 aa12.1□□□□□ -0.47
VPS53-220ENST00000576149 AFDNP55196 1824 aaKnown RBP12.1□□□□□ -0.47
VPS53-220ENST00000576149 COL5A2P05997 1499 aaPredicted RBP12.1□□□□□ -0.47
VPS53-220ENST00000576149 MED23Q9ULK4 1368 aa12.1□□□□□ -0.47
VPS53-220ENST00000576149 HSP90B1P14625 803 aaKnown RBP12.1□□□□□ -0.47
VPS53-220ENST00000576149 H7C1W4 665 aa12.09□□□□□ -0.47
VPS53-220ENST00000576149 LARGE1O95461 756 aa12.09□□□□□ -0.47
VPS53-220ENST00000576149 CCDC173Q0VFZ6 552 aa12.09□□□□□ -0.47
VPS53-220ENST00000576149 ZSCAN31Q96LW9 406 aaPredicted RBP12.09□□□□□ -0.47
VPS53-220ENST00000576149 PPP1R9BQ96SB3 815 aa12.09□□□□□ -0.47
VPS53-220ENST00000576149 SH2B1Q9NRF2 756 aaPredicted RBP12.09□□□□□ -0.47
VPS53-220ENST00000576149 JCADQ9P266 1359 aa12.09□□□□□ -0.47
VPS53-220ENST00000576149 SLC27A2O14975 620 aa12.09□□□□□ -0.47
VPS53-220ENST00000576149 KCNJ4P48050 445 aa12.09□□□□□ -0.47
VPS53-220ENST00000576149 PRIM1P49642 420 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms