RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZNF157P51786 506 aaPredicted RBP22.51■■□□□ 1.19
VPS53-218ENST00000575207 HIRAP54198 1017 aaPredicted RBP22.51■■□□□ 1.19
VPS53-218ENST00000575207 SIN3AQ96ST3 1273 aa22.51■■□□□ 1.19
VPS53-218ENST00000575207 IL6STP40189 918 aaPredicted RBP22.5■■□□□ 1.19
VPS53-218ENST00000575207 NBPF5PQ86XG9 351 aaPredicted RBP22.5■■□□□ 1.19
VPS53-218ENST00000575207 ZNF296Q8WUU4 475 aaPredicted RBP22.5■■□□□ 1.19
VPS53-218ENST00000575207 CARD14Q9BXL6 1004 aa22.5■■□□□ 1.19
VPS53-218ENST00000575207 CENPFP49454 3210 aa22.5■■□□□ 1.19
VPS53-218ENST00000575207 RANBP2P49792 3224 aaKnown RBP22.5■■□□□ 1.19
VPS53-218ENST00000575207 MRC1P22897 1456 aa22.49■■□□□ 1.19
VPS53-218ENST00000575207 SLC10A3P09131 477 aa22.49■■□□□ 1.19
VPS53-218ENST00000575207 PITPNM2Q9BZ72 1349 aa22.49■■□□□ 1.19
VPS53-218ENST00000575207 LGR6Q9HBX8 967 aa22.48■■□□□ 1.19
VPS53-218ENST00000575207 GBA2Q9HCG7 927 aaPredicted RBP22.48■■□□□ 1.19
VPS53-218ENST00000575207 GRIPAP1Q4V328 841 aa22.47■■□□□ 1.19
VPS53-218ENST00000575207 USP48Q86UV5 1035 aa22.47■■□□□ 1.19
VPS53-218ENST00000575207 KIAA0100Q14667 2235 aaKnown RBP22.47■■□□□ 1.19
VPS53-218ENST00000575207 POTEFA5A3E0 1075 aa22.46■■□□□ 1.19
VPS53-218ENST00000575207 MNX1P50219 401 aaPredicted RBP22.46■■□□□ 1.19
VPS53-218ENST00000575207 NIM1KQ8IY84 436 aa22.46■■□□□ 1.19
VPS53-218ENST00000575207 C2orf69Q8N8R5 385 aa22.46■■□□□ 1.19
VPS53-218ENST00000575207 ZNF330Q9Y3S2 320 aaPredicted RBP22.46■■□□□ 1.19
VPS53-218ENST00000575207 CDHR2Q9BYE9 1310 aa22.46■■□□□ 1.19
VPS53-218ENST00000575207 GMPSP49915 693 aaPredicted RBP22.45■■□□□ 1.18
VPS53-218ENST00000575207 NOM1Q5C9Z4 860 aaKnown RBP22.45■■□□□ 1.18
VPS53-218ENST00000575207 AEBP1Q8IUX7 1158 aa22.45■■□□□ 1.18
VPS53-218ENST00000575207 NPC1L1Q9UHC9 1359 aa22.45■■□□□ 1.18
VPS53-218ENST00000575207 CXCL9Q07325 125 aa22.44■■□□□ 1.18
VPS53-218ENST00000575207 INTS3Q68E01 1043 aaKnown RBP22.44■■□□□ 1.18
VPS53-218ENST00000575207 DLK2Q6UY11 383 aa22.44■■□□□ 1.18
VPS53-218ENST00000575207 CLEC4GQ6UXB4 293 aa22.43■■□□□ 1.18
VPS53-218ENST00000575207 TPTE2Q6XPS3 522 aa22.43■■□□□ 1.18
VPS53-218ENST00000575207 TRPM4Q8TD43 1214 aa22.43■■□□□ 1.18
VPS53-218ENST00000575207 OTUD5Q96G74 571 aa22.43■■□□□ 1.18
VPS53-218ENST00000575207 RNMTO43148 476 aaKnown RBP22.42■■□□□ 1.18
VPS53-218ENST00000575207 UBR2Q8IWV8 1755 aa22.42■■□□□ 1.18
VPS53-218ENST00000575207 NEUROD1Q13562 356 aa22.41■■□□□ 1.18
VPS53-218ENST00000575207 TEX13AQ9BXU3 409 aaPredicted RBP22.41■■□□□ 1.18
VPS53-218ENST00000575207 CRY2Q49AN0 593 aa22.4■■□□□ 1.18
VPS53-218ENST00000575207 TBC1D8O95759 1140 aa22.39■■□□□ 1.17
VPS53-218ENST00000575207 NPM2Q86SE8 214 aaKnown RBP22.39■■□□□ 1.17
VPS53-218ENST00000575207 DZIP3Q86Y13 1208 aaKnown RBP22.39■■□□□ 1.17
VPS53-218ENST00000575207 VPS33BQ9H267 617 aa22.39■■□□□ 1.17
VPS53-218ENST00000575207 ZNRF3Q9ULT6 936 aa22.39■■□□□ 1.17
VPS53-218ENST00000575207 GPR25O00155 361 aa22.38■■□□□ 1.17
VPS53-218ENST00000575207 PPIP5K2O43314 1243 aa22.38■■□□□ 1.17
VPS53-218ENST00000575207 RBBP6Q7Z6E9 1792 aaKnown RBP22.37■■□□□ 1.17
VPS53-218ENST00000575207 KRT26Q7Z3Y9 468 aa22.36■■□□□ 1.17
VPS53-218ENST00000575207 RASAL3Q86YV0 1011 aa22.35■■□□□ 1.17
VPS53-218ENST00000575207 BCL2L13Q9BXK5 485 aa22.35■■□□□ 1.17
VPS53-218ENST00000575207 CNOT7Q9UIV1 285 aaKnown RBP22.35■■□□□ 1.17
VPS53-218ENST00000575207 HEG1Q9ULI3 1381 aa22.35■■□□□ 1.17
VPS53-218ENST00000575207 A1BGP04217 495 aa22.34■■□□□ 1.17
VPS53-218ENST00000575207 AOC3Q16853 763 aa22.34■■□□□ 1.17
VPS53-218ENST00000575207 SULT6B1Q6IMI4 303 aa22.34■■□□□ 1.17
VPS53-218ENST00000575207 TTC5Q8N0Z6 440 aa22.34■■□□□ 1.17
VPS53-218ENST00000575207 ZNF496Q96IT1 587 aaPredicted RBP22.34■■□□□ 1.17
VPS53-218ENST00000575207 ZNF652Q9Y2D9 606 aa22.34■■□□□ 1.17
VPS53-218ENST00000575207 PAPPA2Q9BXP8 1791 aa22.33■■□□□ 1.17
VPS53-218ENST00000575207 HOXA10P31260 410 aaPredicted RBP22.33■■□□□ 1.17
VPS53-218ENST00000575207 H7C1D1 291 aa22.32■■□□□ 1.16
VPS53-218ENST00000575207 RGL2O15211 777 aa22.32■■□□□ 1.16
VPS53-218ENST00000575207 FKTNO75072 461 aa22.32■■□□□ 1.16
VPS53-218ENST00000575207 EN2P19622 333 aaPredicted RBP22.32■■□□□ 1.16
VPS53-218ENST00000575207 SHTN1A0MZ66 631 aa22.31■■□□□ 1.16
VPS53-218ENST00000575207 H0YGN5 161 aa22.31■■□□□ 1.16
VPS53-218ENST00000575207 TNNT2P45379 298 aaPredicted RBP22.31■■□□□ 1.16
VPS53-218ENST00000575207 TNIP1Q15025 636 aa22.31■■□□□ 1.16
VPS53-218ENST00000575207 NIP7Q9Y221 180 aaKnown RBP eCLIP22.31■■□□□ 1.16
VPS53-218ENST00000575207 KIF7Q2M1P5 1343 aa22.31■■□□□ 1.16
VPS53-218ENST00000575207 UNC80Q8N2C7 3258 aa22.3■■□□□ 1.16
VPS53-218ENST00000575207 SLC51AQ86UW1 340 aa22.3■■□□□ 1.16
VPS53-218ENST00000575207 CFHR5Q9BXR6 569 aa22.3■■□□□ 1.16
VPS53-218ENST00000575207 POLR2AP24928 1970 aaKnown RBP22.29■■□□□ 1.16
VPS53-218ENST00000575207 ADM5C9JUS6 153 aa22.29■■□□□ 1.16
VPS53-218ENST00000575207 CDCA8Q53HL2 280 aa22.29■■□□□ 1.16
VPS53-218ENST00000575207 MICALL2Q8IY33 904 aa22.29■■□□□ 1.16
VPS53-218ENST00000575207 TM4SF4P48230 202 aa22.28■■□□□ 1.16
VPS53-218ENST00000575207 CHRDL2Q6WN34 429 aa22.28■■□□□ 1.16
VPS53-218ENST00000575207 LAMA3Q16787 3333 aa22.28■■□□□ 1.16
VPS53-218ENST00000575207 RAD17O75943 681 aa22.27■■□□□ 1.16
VPS53-218ENST00000575207 ZNF790Q6PG37 636 aa22.27■■□□□ 1.16
VPS53-218ENST00000575207 DCPSQ96C86 337 aaKnown RBP22.27■■□□□ 1.16
VPS53-218ENST00000575207 RBM27Q9P2N5 1060 aaKnown RBP22.27■■□□□ 1.16
VPS53-218ENST00000575207 RIC1Q4ADV7 1423 aa22.26■■□□□ 1.15
VPS53-218ENST00000575207 FAM177BA6PVY3 158 aa22.26■■□□□ 1.15
VPS53-218ENST00000575207 PPEF1O14829 653 aaPredicted RBP22.26■■□□□ 1.15
VPS53-218ENST00000575207 GTF2E1P29083 439 aaPredicted RBP22.26■■□□□ 1.15
VPS53-218ENST00000575207 SAMD7Q7Z3H4 446 aa22.26■■□□□ 1.15
VPS53-218ENST00000575207 DPF2Q92785 391 aa22.26■■□□□ 1.15
VPS53-218ENST00000575207 CRAMP1Q96RY5 1269 aa22.26■■□□□ 1.15
VPS53-218ENST00000575207 RTFDC1Q9BY42 306 aaPredicted RBP22.26■■□□□ 1.15
VPS53-218ENST00000575207 RPGRQ92834 1020 aaKnown RBP22.25■■□□□ 1.15
VPS53-218ENST00000575207 ARMC5Q96C12 935 aa22.25■■□□□ 1.15
VPS53-218ENST00000575207 ABCC12Q96J65 1359 aa22.25■■□□□ 1.15
VPS53-218ENST00000575207 FKBP1BP68106 108 aa22.24■■□□□ 1.15
VPS53-218ENST00000575207 SUPT20HQ8NEM7 779 aa22.24■■□□□ 1.15
VPS53-218ENST00000575207 EGFRP00533 1210 aa22.23■■□□□ 1.15
VPS53-218ENST00000575207 TRIM17Q9Y577 477 aa22.23■■□□□ 1.15
VPS53-218ENST00000575207 KIAA2012Q0VF49 1180 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms