RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 UBN2Q6ZU65 1347 aa30.15■■■□□ 2.42
ATPAF1-213ENST00000574428 UBE3BQ7Z3V4 1068 aa30.15■■■□□ 2.42
ATPAF1-213ENST00000574428 CLEC4GQ6UXB4 293 aa30.14■■■□□ 2.42
ATPAF1-213ENST00000574428 IGHDP01880 384 aa30.13■■■□□ 2.41
ATPAF1-213ENST00000574428 ANO8Q9HCE9 1232 aaPredicted RBP30.13■■■□□ 2.41
ATPAF1-213ENST00000574428 RTL5Q5HYW3 569 aaPredicted RBP30.13■■■□□ 2.41
ATPAF1-213ENST00000574428 CEP85Q6P2H3 762 aa30.13■■■□□ 2.41
ATPAF1-213ENST00000574428 SIRT2Q8IXJ6 389 aa30.12■■■□□ 2.41
ATPAF1-213ENST00000574428 NIP7Q9Y221 180 aaKnown RBP eCLIP30.12■■■□□ 2.41
ATPAF1-213ENST00000574428 H7C1W4 665 aa30.11■■■□□ 2.41
ATPAF1-213ENST00000574428 SUCLG2Q96I99 432 aa30.11■■■□□ 2.41
ATPAF1-213ENST00000574428 RGL2O15211 777 aa30.1■■■□□ 2.41
ATPAF1-213ENST00000574428 CASP7P55210 303 aa30.1■■■□□ 2.41
ATPAF1-213ENST00000574428 ANKRD44Q8N8A2 993 aa30.1■■■□□ 2.41
ATPAF1-213ENST00000574428 TBC1D9BQ66K14 1250 aa30.09■■■□□ 2.41
ATPAF1-213ENST00000574428 BICDL1Q6ZP65 573 aa30.08■■■□□ 2.41
ATPAF1-213ENST00000574428 KAZALD1Q96I82 304 aa30.08■■■□□ 2.41
ATPAF1-213ENST00000574428 RWDD1Q9H446 243 aaPredicted RBP30.08■■■□□ 2.41
ATPAF1-213ENST00000574428 HDAC1Q13547 482 aaPredicted RBP30.08■■■□□ 2.41
ATPAF1-213ENST00000574428 RPAP2Q8IXW5 612 aaPredicted RBP30.08■■■□□ 2.41
ATPAF1-213ENST00000574428 FAM89AQ96GI7 184 aa30.08■■■□□ 2.41
ATPAF1-213ENST00000574428 STK32BQ9NY57 414 aa30.08■■■□□ 2.41
ATPAF1-213ENST00000574428 HDAC5Q9UQL6 1122 aa30.08■■■□□ 2.41
ATPAF1-213ENST00000574428 KDM2BQ8NHM5 1336 aa30.07■■■□□ 2.4
ATPAF1-213ENST00000574428 FAM177BA6PVY3 158 aa30.07■■■□□ 2.4
ATPAF1-213ENST00000574428 SLC15A2Q16348 729 aa30.07■■■□□ 2.4
ATPAF1-213ENST00000574428 SUSD4Q5VX71 490 aa30.07■■■□□ 2.4
ATPAF1-213ENST00000574428 COL23A1Q86Y22 540 aaPredicted RBP30.07■■■□□ 2.4
ATPAF1-213ENST00000574428 PELP1Q8IZL8 1130 aaKnown RBP30.07■■■□□ 2.4
ATPAF1-213ENST00000574428 ZBTB38Q8NAP3 1195 aaPredicted RBP30.07■■■□□ 2.4
ATPAF1-213ENST00000574428 UPF1Q92900 1129 aaKnown RBP eCLIP30.07■■■□□ 2.4
ATPAF1-213ENST00000574428 MSH5O43196 834 aa30.06■■■□□ 2.4
ATPAF1-213ENST00000574428 PCCAP05165 728 aaPredicted RBP30.06■■■□□ 2.4
ATPAF1-213ENST00000574428 PARP10Q53GL7 1025 aa30.06■■■□□ 2.4
ATPAF1-213ENST00000574428 BICC1Q9H694 974 aaKnown RBP30.06■■■□□ 2.4
ATPAF1-213ENST00000574428 TRMT112Q9UI30 125 aaKnown RBP30.06■■■□□ 2.4
ATPAF1-213ENST00000574428 PNPLA7Q6ZV29 1317 aa30.06■■■□□ 2.4
ATPAF1-213ENST00000574428 GYS1P13807 737 aa30.05■■■□□ 2.4
ATPAF1-213ENST00000574428 EPHA10Q5JZY3 1008 aa30.05■■■□□ 2.4
ATPAF1-213ENST00000574428 SYNE4Q8N205 404 aa30.05■■■□□ 2.4
ATPAF1-213ENST00000574428 CENPQQ7L2Z9 268 aaPredicted RBP30.04■■■□□ 2.4
ATPAF1-213ENST00000574428 FLAD1Q8NFF5 587 aa30.04■■■□□ 2.4
ATPAF1-213ENST00000574428 PNMA6EA0A0J9YXQ4 647 aa30.03■■■□□ 2.4
ATPAF1-213ENST00000574428 UTP14AQ9BVJ6 771 aaKnown RBP30.03■■■□□ 2.4
ATPAF1-213ENST00000574428 ATP8B2P98198 1209 aa30.03■■■□□ 2.4
ATPAF1-213ENST00000574428 COL24A1Q17RW2 1714 aa30.02■■■□□ 2.4
ATPAF1-213ENST00000574428 PPP1R42Q7Z4L9 355 aa30.02■■■□□ 2.4
ATPAF1-213ENST00000574428 SETDB2Q96T68 719 aa30.02■■■□□ 2.4
ATPAF1-213ENST00000574428 NTSR2O95665 410 aa30.01■■■□□ 2.39
ATPAF1-213ENST00000574428 CDHR2Q9BYE9 1310 aa30■■■□□ 2.39
ATPAF1-213ENST00000574428 SRGAP3O43295 1099 aa30■■■□□ 2.39
ATPAF1-213ENST00000574428 NFIXQ14938 502 aa30■■■□□ 2.39
ATPAF1-213ENST00000574428 QSER1Q2KHR3 1735 aa29.99■■■□□ 2.39
ATPAF1-213ENST00000574428 SH3TC1Q8TE82 1336 aa29.99■■■□□ 2.39
ATPAF1-213ENST00000574428 HMMRO75330 724 aa29.99■■■□□ 2.39
ATPAF1-213ENST00000574428 FOXO4P98177 505 aa29.99■■■□□ 2.39
ATPAF1-213ENST00000574428 MTX1Q13505 466 aa29.98■■■□□ 2.39
ATPAF1-213ENST00000574428 NUTM1Q86Y26 1132 aa29.98■■■□□ 2.39
ATPAF1-213ENST00000574428 IRS4O14654 1257 aaPredicted RBP29.98■■■□□ 2.39
ATPAF1-213ENST00000574428 RABL6Q3YEC7 729 aaPredicted RBP29.96■■■□□ 2.39
ATPAF1-213ENST00000574428 ILDR2Q71H61 639 aa29.96■■■□□ 2.39
ATPAF1-213ENST00000574428 SSH3Q8TE77 659 aa29.96■■■□□ 2.39
ATPAF1-213ENST00000574428 CARMIL3Q8ND23 1372 aa29.96■■■□□ 2.39
ATPAF1-213ENST00000574428 POLA2Q14181 598 aa29.95■■■□□ 2.39
ATPAF1-213ENST00000574428 LMBR1LQ6UX01 489 aa29.95■■■□□ 2.39
ATPAF1-213ENST00000574428 NBPF5PQ86XG9 351 aaPredicted RBP29.95■■■□□ 2.39
ATPAF1-213ENST00000574428 PLA2G12BQ9BX93 195 aa29.95■■■□□ 2.38
ATPAF1-213ENST00000574428 HCLS1P14317 486 aaPredicted RBP29.94■■■□□ 2.38
ATPAF1-213ENST00000574428 ERFEQ4G0M1 354 aa29.94■■■□□ 2.38
ATPAF1-213ENST00000574428 SMC5Q8IY18 1101 aa29.93■■■□□ 2.38
ATPAF1-213ENST00000574428 NYXQ9GZU5 481 aa29.93■■■□□ 2.38
ATPAF1-213ENST00000574428 CHMP3Q9Y3E7 222 aa29.93■■■□□ 2.38
ATPAF1-213ENST00000574428 DDX60Q8IY21 1712 aaKnown RBP29.93■■■□□ 2.38
ATPAF1-213ENST00000574428 TM4SF1P30408 202 aa29.92■■■□□ 2.38
ATPAF1-213ENST00000574428 DCTPP1Q9H773 170 aa29.92■■■□□ 2.38
ATPAF1-213ENST00000574428 LAMB2P55268 1798 aa29.92■■■□□ 2.38
ATPAF1-213ENST00000574428 GTF2E1P29083 439 aaPredicted RBP29.91■■■□□ 2.38
ATPAF1-213ENST00000574428 MSL1Q68DK7 614 aa29.91■■■□□ 2.38
ATPAF1-213ENST00000574428 NLGN1Q8N2Q7 840 aa29.91■■■□□ 2.38
ATPAF1-213ENST00000574428 ABCC12Q96J65 1359 aa29.91■■■□□ 2.38
ATPAF1-213ENST00000574428 PDE8AO60658 829 aa29.9■■■□□ 2.38
ATPAF1-213ENST00000574428 DDR1Q08345 913 aa29.9■■■□□ 2.38
ATPAF1-213ENST00000574428 GCC1Q96CN9 775 aa29.9■■■□□ 2.38
ATPAF1-213ENST00000574428 PDGFDQ9GZP0 370 aaPredicted RBP29.9■■■□□ 2.38
ATPAF1-213ENST00000574428 CTSWP56202 376 aa29.9■■■□□ 2.38
ATPAF1-213ENST00000574428 TPTE2Q6XPS3 522 aa29.9■■■□□ 2.38
ATPAF1-213ENST00000574428 CCDC85AQ96PX6 553 aaPredicted RBP29.9■■■□□ 2.38
ATPAF1-213ENST00000574428 EXOC6BQ9Y2D4 811 aa29.89■■■□□ 2.38
ATPAF1-213ENST00000574428 MYH3P11055 1940 aa29.89■■■□□ 2.38
ATPAF1-213ENST00000574428 CCDC24Q8N4L8 307 aa29.88■■■□□ 2.37
ATPAF1-213ENST00000574428 NPHP1O15259 732 aa29.87■■■□□ 2.37
ATPAF1-213ENST00000574428 PA2G4Q9UQ80 394 aaKnown RBP29.87■■■□□ 2.37
ATPAF1-213ENST00000574428 POLRMTO00411 1230 aaKnown RBP29.87■■■□□ 2.37
ATPAF1-213ENST00000574428 CSF1RP07333 972 aa29.87■■■□□ 2.37
ATPAF1-213ENST00000574428 FAM161AQ3B820 660 aa29.87■■■□□ 2.37
ATPAF1-213ENST00000574428 SKAP1Q86WV1 359 aa29.87■■■□□ 2.37
ATPAF1-213ENST00000574428 CNBD1Q8NA66 436 aa29.87■■■□□ 2.37
ATPAF1-213ENST00000574428 TTLL11Q8NHH1 800 aa29.87■■■□□ 2.37
ATPAF1-213ENST00000574428 KLHDC4Q8TBB5 520 aa29.87■■■□□ 2.37
ATPAF1-213ENST00000574428 APBB1O00213 710 aa29.86■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms