RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 NOM1Q5C9Z4 860 aaKnown RBP8.76□□□□□ -1.01
NUP88-208ENST00000574087 RNFT1Q5M7Z0 435 aa8.76□□□□□ -1.01
NUP88-208ENST00000574087 COL25A1Q9BXS0 654 aaPredicted RBP8.76□□□□□ -1.01
NUP88-208ENST00000574087 H3BRB1 525 aa8.75□□□□□ -1.01
NUP88-208ENST00000574087 ZAP70P43403 619 aa8.75□□□□□ -1.01
NUP88-208ENST00000574087 EIF1AXP47813 144 aaKnown RBP8.75□□□□□ -1.01
NUP88-208ENST00000574087 ARSDP51689 593 aa8.75□□□□□ -1.01
NUP88-208ENST00000574087 KRT76Q01546 638 aa8.75□□□□□ -1.01
NUP88-208ENST00000574087 FAM182BQ5T319 152 aa8.75□□□□□ -1.01
NUP88-208ENST00000574087 TUT1Q9H6E5 874 aaKnown RBP8.75□□□□□ -1.01
NUP88-208ENST00000574087 MARK1Q9P0L2 795 aa8.75□□□□□ -1.01
NUP88-208ENST00000574087 KCNH4Q9UQ05 1017 aa8.75□□□□□ -1.01
NUP88-208ENST00000574087 GMPRP36959 345 aa8.74□□□□□ -1.01
NUP88-208ENST00000574087 CTBSQ01459 385 aa8.74□□□□□ -1.01
NUP88-208ENST00000574087 GLYCTKQ8IVS8 523 aa8.74□□□□□ -1.01
NUP88-208ENST00000574087 MBIPQ9NS73 344 aa8.74□□□□□ -1.01
NUP88-208ENST00000574087 CD33P20138 364 aa8.73□□□□□ -1.01
NUP88-208ENST00000574087 ARHGAP4P98171 946 aa8.73□□□□□ -1.01
NUP88-208ENST00000574087 ALKBH2Q6NS38 261 aa8.73□□□□□ -1.01
NUP88-208ENST00000574087 ATCAYQ86WG3 371 aa8.73□□□□□ -1.01
NUP88-208ENST00000574087 C2CD2LO14523 706 aa8.72□□□□□ -1.01
NUP88-208ENST00000574087 EPB42P16452 691 aa8.72□□□□□ -1.01
NUP88-208ENST00000574087 MX2P20592 715 aa8.72□□□□□ -1.01
NUP88-208ENST00000574087 GRIN2CQ14957 1233 aa8.72□□□□□ -1.01
NUP88-208ENST00000574087 C11orf16Q9NQ32 467 aa8.72□□□□□ -1.01
NUP88-208ENST00000574087 FAM13BQ9NYF5 915 aa8.72□□□□□ -1.01
NUP88-208ENST00000574087 USP20Q9Y2K6 914 aa8.72□□□□□ -1.01
NUP88-208ENST00000574087 RTCBQ9Y3I0 505 aaKnown RBP8.72□□□□□ -1.01
NUP88-208ENST00000574087 RGL4Q8IZJ4 473 aa8.71□□□□□ -1.02
NUP88-208ENST00000574087 CNTNAP3BQ96NU0 1288 aa8.71□□□□□ -1.02
NUP88-208ENST00000574087 CNTNAP3Q9BZ76 1288 aa8.71□□□□□ -1.02
NUP88-208ENST00000574087 KCNMB2Q9Y691 235 aa8.71□□□□□ -1.02
NUP88-208ENST00000574087 FZD6O60353 706 aa8.7□□□□□ -1.02
NUP88-208ENST00000574087 GPR152Q8TDT2 470 aa8.7□□□□□ -1.02
NUP88-208ENST00000574087 PIK3R5Q8WYR1 880 aa8.7□□□□□ -1.02
NUP88-208ENST00000574087 SLC30A3Q99726 388 aa8.7□□□□□ -1.02
NUP88-208ENST00000574087 GSX2Q9BZM3 304 aa8.7□□□□□ -1.02
NUP88-208ENST00000574087 EGFRP00533 1210 aa8.69□□□□□ -1.02
NUP88-208ENST00000574087 BMP4P12644 408 aa8.69□□□□□ -1.02
NUP88-208ENST00000574087 MZF1P28698 734 aaPredicted RBP8.69□□□□□ -1.02
NUP88-208ENST00000574087 SRSF11Q05519 484 aaKnown RBP8.69□□□□□ -1.02
NUP88-208ENST00000574087 CMTR1Q8N1G2 835 aaKnown RBP8.69□□□□□ -1.02
NUP88-208ENST00000574087 EDEM1Q92611 657 aa8.69□□□□□ -1.02
NUP88-208ENST00000574087 IGF1RP08069 1367 aa8.69□□□□□ -1.02
NUP88-208ENST00000574087 PDGFAP04085 211 aa8.68□□□□□ -1.02
NUP88-208ENST00000574087 MAP2K3P46734 347 aa8.68□□□□□ -1.02
NUP88-208ENST00000574087 SPEM2Q0P670 501 aa8.68□□□□□ -1.02
NUP88-208ENST00000574087 TRIP4Q15650 581 aaPredicted RBP8.68□□□□□ -1.02
NUP88-208ENST00000574087 CCDC87Q9NVE4 849 aa8.68□□□□□ -1.02
NUP88-208ENST00000574087 NSFL1CQ9UNZ2 370 aaKnown RBP8.68□□□□□ -1.02
NUP88-208ENST00000574087 WIPF1O43516 503 aa8.67□□□□□ -1.02
NUP88-208ENST00000574087 DNM1Q05193 864 aaKnown RBP8.67□□□□□ -1.02
NUP88-208ENST00000574087 AAMPQ13685 434 aa8.67□□□□□ -1.02
NUP88-208ENST00000574087 CCINQ13939 588 aa8.67□□□□□ -1.02
NUP88-208ENST00000574087 NUDT16Q96DE0 195 aaKnown RBP8.67□□□□□ -1.02
NUP88-208ENST00000574087 EFCC1Q9HA90 598 aa8.67□□□□□ -1.02
NUP88-208ENST00000574087 BIN2Q9UBW5 565 aaPredicted RBP8.67□□□□□ -1.02
NUP88-208ENST00000574087 POLIQ9UNA4 740 aa8.67□□□□□ -1.02
NUP88-208ENST00000574087 XYLBO75191 536 aa8.66□□□□□ -1.02
NUP88-208ENST00000574087 ADAMTS2O95450 1211 aa8.66□□□□□ -1.02
NUP88-208ENST00000574087 SLURP2P0DP57 97 aa8.66□□□□□ -1.02
NUP88-208ENST00000574087 ZNF468Q5VIY5 522 aaPredicted RBP8.66□□□□□ -1.02
NUP88-208ENST00000574087 SND1Q7KZF4 910 aaKnown RBP eCLIP8.66□□□□□ -1.02
NUP88-208ENST00000574087 AVENQ9NQS1 362 aaPredicted RBP8.66□□□□□ -1.02
NUP88-208ENST00000574087 ZBTB7CA1YPR0 619 aa8.65□□□□□ -1.02
NUP88-208ENST00000574087 ARAFP10398 606 aa8.65□□□□□ -1.02
NUP88-208ENST00000574087 GZF1Q9H116 711 aaPredicted RBP8.65□□□□□ -1.02
NUP88-208ENST00000574087 GGNBP2Q9H3C7 697 aa8.65□□□□□ -1.02
NUP88-208ENST00000574087 KLF15Q9UIH9 416 aa8.65□□□□□ -1.02
NUP88-208ENST00000574087 UBAP1LF5GYI3 381 aa8.64□□□□□ -1.03
NUP88-208ENST00000574087 RPLP1P05386 114 aaKnown RBP8.64□□□□□ -1.03
NUP88-208ENST00000574087 RAB44Q7Z6P3 723 aaPredicted RBP8.64□□□□□ -1.03
NUP88-208ENST00000574087 BRPF3Q9ULD4 1205 aa8.64□□□□□ -1.03
NUP88-208ENST00000574087 PRR12Q9ULL5 1215 aa8.64□□□□□ -1.03
NUP88-208ENST00000574087 FNDC3AQ9Y2H6 1198 aaKnown RBP8.64□□□□□ -1.03
NUP88-208ENST00000574087 SASH3O75995 380 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 PCSK2P16519 638 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 TARSP26639 723 aaKnown RBP8.63□□□□□ -1.03
NUP88-208ENST00000574087 USP5P45974 858 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 TRIM26Q12899 539 aaPredicted RBP8.63□□□□□ -1.03
NUP88-208ENST00000574087 XKR5Q6UX68 686 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 SYT9Q86SS6 491 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 GJD3Q8N144 294 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 BHMTQ93088 406 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 ACDQ96AP0 544 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 CITED4Q96RK1 184 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 ZFATQ9P243 1243 aa8.63□□□□□ -1.03
NUP88-208ENST00000574087 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.63□□□□□ -1.03
NUP88-208ENST00000574087 NDUFB5O43674 189 aa8.62□□□□□ -1.03
NUP88-208ENST00000574087 SIN3BO75182 1162 aa8.62□□□□□ -1.03
NUP88-208ENST00000574087 NFKB1P19838 968 aa8.62□□□□□ -1.03
NUP88-208ENST00000574087 PCBP4P57723 403 aaKnown RBP8.62□□□□□ -1.03
NUP88-208ENST00000574087 NEUROD1Q13562 356 aa8.62□□□□□ -1.03
NUP88-208ENST00000574087 PNMA5Q96PV4 448 aa8.62□□□□□ -1.03
NUP88-208ENST00000574087 OXCT2Q9BYC2 517 aaPredicted RBP8.62□□□□□ -1.03
NUP88-208ENST00000574087 DCTN4Q9UJW0 460 aa8.62□□□□□ -1.03
NUP88-208ENST00000574087 ADH6P28332 368 aa8.61□□□□□ -1.03
NUP88-208ENST00000574087 C8orf34Q49A92 452 aa8.61□□□□□ -1.03
NUP88-208ENST00000574087 PDE12Q6L8Q7 609 aaKnown RBP8.61□□□□□ -1.03
NUP88-208ENST00000574087 KRT25Q7Z3Z0 450 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms