RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 MSL1Q68DK7 614 aa12.16□□□□□ -0.46
SMG6-213ENST00000573166 HEG1Q9ULI3 1381 aa12.16□□□□□ -0.46
SMG6-213ENST00000573166 RRP12Q5JTH9 1297 aaKnown RBP12.15□□□□□ -0.46
SMG6-213ENST00000573166 ATG3Q9NT62 314 aa12.15□□□□□ -0.46
SMG6-213ENST00000573166 CPDO75976 1380 aa12.15□□□□□ -0.46
SMG6-213ENST00000573166 SPATA31A5Q5VU36 1347 aa12.15□□□□□ -0.46
SMG6-213ENST00000573166 SPATA31A7Q8IWB4 1347 aa12.15□□□□□ -0.46
SMG6-213ENST00000573166 CPLX1O14810 134 aa12.15□□□□□ -0.46
SMG6-213ENST00000573166 USPL1Q5W0Q7 1092 aa12.15□□□□□ -0.46
SMG6-213ENST00000573166 TSHZ3Q63HK5 1081 aa12.15□□□□□ -0.46
SMG6-213ENST00000573166 OVOS2A0A0G2JMS6 1433 aa12.15□□□□□ -0.46
SMG6-213ENST00000573166 DHX16O60231 1041 aaKnown RBP12.15□□□□□ -0.46
SMG6-213ENST00000573166 PDE8AO60658 829 aa12.15□□□□□ -0.46
SMG6-213ENST00000573166 DZIP1Q86YF9 867 aaKnown RBP12.15□□□□□ -0.46
SMG6-213ENST00000573166 IQSEC3Q9UPP2 1182 aaPredicted RBP12.15□□□□□ -0.46
SMG6-213ENST00000573166 MAP3K12Q12852 859 aa12.14□□□□□ -0.47
SMG6-213ENST00000573166 STK11IPQ8N1F8 1099 aa12.14□□□□□ -0.47
SMG6-213ENST00000573166 AIDAQ96BJ3 306 aa12.14□□□□□ -0.47
SMG6-213ENST00000573166 NEURL1BA8MQ27 555 aa12.14□□□□□ -0.47
SMG6-213ENST00000573166 TRMT2AQ8IZ69 625 aaKnown RBP12.14□□□□□ -0.47
SMG6-213ENST00000573166 FAM184AQ8NB25 1140 aa12.14□□□□□ -0.47
SMG6-213ENST00000573166 CHMP4CQ96CF2 233 aa12.14□□□□□ -0.47
SMG6-213ENST00000573166 NCAPD2Q15021 1401 aa12.14□□□□□ -0.47
SMG6-213ENST00000573166 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.14□□□□□ -0.47
SMG6-213ENST00000573166 SAMD1Q6SPF0 538 aaPredicted RBP12.14□□□□□ -0.47
SMG6-213ENST00000573166 ZSCAN29Q8IWY8 852 aaPredicted RBP12.14□□□□□ -0.47
SMG6-213ENST00000573166 VSIG10Q8N0Z9 540 aa12.14□□□□□ -0.47
SMG6-213ENST00000573166 CD163L1Q9NR16 1453 aa12.14□□□□□ -0.47
SMG6-213ENST00000573166 GOLIM4O00461 696 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 SLC3A2P08195 630 aaKnown RBP12.13□□□□□ -0.47
SMG6-213ENST00000573166 MARCH10Q8NA82 808 aaPredicted RBP12.13□□□□□ -0.47
SMG6-213ENST00000573166 MAP3K15Q6ZN16 1313 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 ITSN1Q15811 1721 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 ITGA6P23229 1130 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 MTMR7Q9Y216 660 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 TDO2P48775 406 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 SUCLG2Q96I99 432 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 ANO8Q9HCE9 1232 aaPredicted RBP12.13□□□□□ -0.47
SMG6-213ENST00000573166 PSMA5P28066 241 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 KLHDC4Q8TBB5 520 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 ZC3H12CQ9C0D7 883 aaKnown RBP12.13□□□□□ -0.47
SMG6-213ENST00000573166 TMOD2Q9NZR1 351 aa12.13□□□□□ -0.47
SMG6-213ENST00000573166 GIGYF2Q6Y7W6 1299 aaKnown RBP12.12□□□□□ -0.47
SMG6-213ENST00000573166 BARGINQ6ZT62 677 aa12.12□□□□□ -0.47
SMG6-213ENST00000573166 KDRP35968 1356 aa12.12□□□□□ -0.47
SMG6-213ENST00000573166 NLGN1Q8N2Q7 840 aa12.12□□□□□ -0.47
SMG6-213ENST00000573166 USP44Q9H0E7 712 aa12.12□□□□□ -0.47
SMG6-213ENST00000573166 DCTPP1Q9H773 170 aa12.12□□□□□ -0.47
SMG6-213ENST00000573166 SART3Q15020 963 aaKnown RBP12.11□□□□□ -0.47
SMG6-213ENST00000573166 FOXD4L5Q5VV16 416 aaPredicted RBP12.11□□□□□ -0.47
SMG6-213ENST00000573166 FOXD4L4Q8WXT5 416 aaPredicted RBP12.11□□□□□ -0.47
SMG6-213ENST00000573166 CTDP1Q9Y5B0 961 aaPredicted RBP12.11□□□□□ -0.47
SMG6-213ENST00000573166 NEK4P51957 841 aa12.11□□□□□ -0.47
SMG6-213ENST00000573166 TULP1O00294 542 aaPredicted RBP12.11□□□□□ -0.47
SMG6-213ENST00000573166 UQCRFS1P1P0C7P4 283 aa12.11□□□□□ -0.47
SMG6-213ENST00000573166 RBM17Q96I25 401 aaKnown RBP12.11□□□□□ -0.47
SMG6-213ENST00000573166 ZNF594Q96JF6 807 aaPredicted RBP12.11□□□□□ -0.47
SMG6-213ENST00000573166 H3BQV1 296 aa12.1□□□□□ -0.47
SMG6-213ENST00000573166 NUCB1Q02818 461 aa12.1□□□□□ -0.47
SMG6-213ENST00000573166 BEND3Q5T5X7 828 aa12.1□□□□□ -0.47
SMG6-213ENST00000573166 IFFO2Q5TF58 517 aa12.1□□□□□ -0.47
SMG6-213ENST00000573166 EYA2O00167 538 aa12.1□□□□□ -0.47
SMG6-213ENST00000573166 TFCP2Q12800 502 aa12.1□□□□□ -0.47
SMG6-213ENST00000573166 H0YIN7 160 aa12.1□□□□□ -0.47
SMG6-213ENST00000573166 CTNNA3Q9UI47 895 aa12.1□□□□□ -0.47
SMG6-213ENST00000573166 C16orf71Q8IYS4 520 aaPredicted RBP12.09□□□□□ -0.47
SMG6-213ENST00000573166 EVI5LQ96CN4 794 aa12.09□□□□□ -0.47
SMG6-213ENST00000573166 ATP2B2Q01814 1243 aa12.09□□□□□ -0.47
SMG6-213ENST00000573166 TTF1Q15361 905 aaPredicted RBP12.09□□□□□ -0.47
SMG6-213ENST00000573166 ABCC4O15439 1325 aa12.09□□□□□ -0.47
SMG6-213ENST00000573166 PNMA6EA0A0J9YXQ4 647 aa12.09□□□□□ -0.47
SMG6-213ENST00000573166 USP5P45974 858 aa12.09□□□□□ -0.47
SMG6-213ENST00000573166 ZBTB38Q8NAP3 1195 aaPredicted RBP12.09□□□□□ -0.47
SMG6-213ENST00000573166 ANKRD2Q9GZV1 360 aa12.09□□□□□ -0.47
SMG6-213ENST00000573166 PDE1AP54750 535 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 TIMM10P62072 90 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 SRP68Q9UHB9 627 aaKnown RBP12.08□□□□□ -0.48
SMG6-213ENST00000573166 USP32Q8NFA0 1604 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 RIMBP2O15034 1052 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 TXNRD1Q16881 649 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 GBP4Q96PP9 640 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 BRPF3Q9ULD4 1205 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 RPS6KA4O75676 772 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 PCCAP05165 728 aaPredicted RBP12.08□□□□□ -0.48
SMG6-213ENST00000573166 MCTP1Q6DN14 999 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 FBXO41Q8TF61 875 aa12.08□□□□□ -0.48
SMG6-213ENST00000573166 LDHCP07864 332 aa12.07□□□□□ -0.48
SMG6-213ENST00000573166 IKQ13123 557 aaPredicted RBP12.07□□□□□ -0.48
SMG6-213ENST00000573166 SLF2Q8IX21 1173 aa12.07□□□□□ -0.48
SMG6-213ENST00000573166 BACH2Q9BYV9 841 aa12.07□□□□□ -0.48
SMG6-213ENST00000573166 MINDY4BA8MYZ0 360 aa12.07□□□□□ -0.48
SMG6-213ENST00000573166 TRIM29Q14134 588 aa12.07□□□□□ -0.48
SMG6-213ENST00000573166 VPS53Q5VIR6 699 aa12.07□□□□□ -0.48
SMG6-213ENST00000573166 SPTY2D1Q68D10 685 aaPredicted RBP12.07□□□□□ -0.48
SMG6-213ENST00000573166 ZNF804AQ7Z570 1209 aa12.07□□□□□ -0.48
SMG6-213ENST00000573166 SMC5Q8IY18 1101 aa12.07□□□□□ -0.48
SMG6-213ENST00000573166 NAPBQ9H115 298 aa12.07□□□□□ -0.48
SMG6-213ENST00000573166 RPS8P62241 208 aaKnown RBP12.07□□□□□ -0.48
SMG6-213ENST00000573166 FOXD4L6Q3SYB3 417 aaPredicted RBP12.07□□□□□ -0.48
SMG6-213ENST00000573166 FOXD4L3Q6VB84 417 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms