RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 GTF2E1P29083 439 aaPredicted RBP17.74■□□□□ 0.43
CCDC40-208ENST00000572270 MTHFSDQ2M296 383 aaKnown RBP17.74■□□□□ 0.43
CCDC40-208ENST00000572270 GRIPAP1Q4V328 841 aa17.74■□□□□ 0.43
CCDC40-208ENST00000572270 NIP7Q9Y221 180 aaKnown RBP eCLIP17.74■□□□□ 0.43
CCDC40-208ENST00000572270 HUNKP57058 714 aa17.73■□□□□ 0.43
CCDC40-208ENST00000572270 ZIC5Q96T25 663 aa17.73■□□□□ 0.43
CCDC40-208ENST00000572270 CTU1Q7Z7A3 348 aaKnown RBP17.72■□□□□ 0.43
CCDC40-208ENST00000572270 AKAP11Q9UKA4 1901 aa17.72■□□□□ 0.43
CCDC40-208ENST00000572270 CDC37L1Q7L3B6 337 aa17.71■□□□□ 0.43
CCDC40-208ENST00000572270 SIPA1L3O60292 1781 aaPredicted RBP17.71■□□□□ 0.43
CCDC40-208ENST00000572270 PPIP5K2O43314 1243 aa17.7■□□□□ 0.42
CCDC40-208ENST00000572270 ZC3H15Q8WU90 426 aaKnown RBP17.7■□□□□ 0.42
CCDC40-208ENST00000572270 RPGRQ92834 1020 aaKnown RBP17.7■□□□□ 0.42
CCDC40-208ENST00000572270 TRPA1O75762 1119 aa17.69■□□□□ 0.42
CCDC40-208ENST00000572270 PIP4K2AP48426 406 aaPredicted RBP17.69■□□□□ 0.42
CCDC40-208ENST00000572270 RGMBQ6NW40 437 aa17.69■□□□□ 0.42
CCDC40-208ENST00000572270 PGAP2Q9UHJ9 254 aa17.69■□□□□ 0.42
CCDC40-208ENST00000572270 CCDC102AQ96A19 550 aa17.68■□□□□ 0.42
CCDC40-208ENST00000572270 RNF186Q9NXI6 227 aa17.68■□□□□ 0.42
CCDC40-208ENST00000572270 HPS5Q9UPZ3 1129 aa17.68■□□□□ 0.42
CCDC40-208ENST00000572270 CDHR2Q9BYE9 1310 aa17.68■□□□□ 0.42
CCDC40-208ENST00000572270 NPC1L1Q9UHC9 1359 aa17.67■□□□□ 0.42
CCDC40-208ENST00000572270 RGL2O15211 777 aa17.67■□□□□ 0.42
CCDC40-208ENST00000572270 GMPSP49915 693 aaPredicted RBP17.67■□□□□ 0.42
CCDC40-208ENST00000572270 CRY2Q49AN0 593 aa17.67■□□□□ 0.42
CCDC40-208ENST00000572270 HABP4Q5JVS0 413 aaKnown RBP17.67■□□□□ 0.42
CCDC40-208ENST00000572270 BCL2L13Q9BXK5 485 aa17.67■□□□□ 0.42
CCDC40-208ENST00000572270 NYXQ9GZU5 481 aa17.67■□□□□ 0.42
CCDC40-208ENST00000572270 TMX4Q9H1E5 349 aaPredicted RBP17.67■□□□□ 0.42
CCDC40-208ENST00000572270 PANK3Q9H999 370 aa17.67■□□□□ 0.42
CCDC40-208ENST00000572270 PPEF1O14829 653 aaPredicted RBP17.66■□□□□ 0.42
CCDC40-208ENST00000572270 KIF23Q02241 960 aaPredicted RBP17.66■□□□□ 0.42
CCDC40-208ENST00000572270 AOC3Q16853 763 aa17.66■□□□□ 0.42
CCDC40-208ENST00000572270 GNAT3A8MTJ3 354 aa17.65■□□□□ 0.42
CCDC40-208ENST00000572270 FAM155AB1AL88 458 aaPredicted RBP17.65■□□□□ 0.42
CCDC40-208ENST00000572270 CXCL9Q07325 125 aa17.65■□□□□ 0.42
CCDC40-208ENST00000572270 PKN2Q16513 984 aaKnown RBP17.65■□□□□ 0.42
CCDC40-208ENST00000572270 VPS33BQ9H267 617 aa17.65■□□□□ 0.42
CCDC40-208ENST00000572270 ZNRF3Q9ULT6 936 aa17.65■□□□□ 0.42
CCDC40-208ENST00000572270 ABCC12Q96J65 1359 aa17.65■□□□□ 0.42
CCDC40-208ENST00000572270 TCERG1O14776 1098 aaKnown RBP17.64■□□□□ 0.41
CCDC40-208ENST00000572270 ZNF157P51786 506 aaPredicted RBP17.64■□□□□ 0.41
CCDC40-208ENST00000572270 USP48Q86UV5 1035 aa17.64■□□□□ 0.41
CCDC40-208ENST00000572270 C2orf69Q8N8R5 385 aa17.64■□□□□ 0.41
CCDC40-208ENST00000572270 RBM17Q96I25 401 aaKnown RBP17.64■□□□□ 0.41
CCDC40-208ENST00000572270 USP16Q9Y5T5 823 aa17.64■□□□□ 0.41
CCDC40-208ENST00000572270 BTBD11A6QL63 1104 aa17.63■□□□□ 0.41
CCDC40-208ENST00000572270 NUTM1Q86Y26 1132 aa17.63■□□□□ 0.41
CCDC40-208ENST00000572270 IL17REQ8NFR9 667 aa17.63■□□□□ 0.41
CCDC40-208ENST00000572270 GAS2L2Q8NHY3 880 aa17.63■□□□□ 0.41
CCDC40-208ENST00000572270 TRPM4Q8TD43 1214 aa17.63■□□□□ 0.41
CCDC40-208ENST00000572270 GBA2Q9HCG7 927 aaPredicted RBP17.63■□□□□ 0.41
CCDC40-208ENST00000572270 KIF7Q2M1P5 1343 aa17.63■□□□□ 0.41
CCDC40-208ENST00000572270 RIC1Q4ADV7 1423 aa17.63■□□□□ 0.41
CCDC40-208ENST00000572270 HOXA10P31260 410 aaPredicted RBP17.62■□□□□ 0.41
CCDC40-208ENST00000572270 HIRAP54198 1017 aaPredicted RBP17.62■□□□□ 0.41
CCDC40-208ENST00000572270 SUPT20HQ8NEM7 779 aa17.62■□□□□ 0.41
CCDC40-208ENST00000572270 HDAC9Q9UKV0 1011 aa17.62■□□□□ 0.41
CCDC40-208ENST00000572270 H7C1D1 291 aa17.61■□□□□ 0.41
CCDC40-208ENST00000572270 KCNQ3O43525 872 aa17.61■□□□□ 0.41
CCDC40-208ENST00000572270 TNIP1Q15025 636 aa17.61■□□□□ 0.41
CCDC40-208ENST00000572270 SNRPA1P09661 255 aaKnown RBP17.6■□□□□ 0.41
CCDC40-208ENST00000572270 HLFQ16534 295 aa17.6■□□□□ 0.41
CCDC40-208ENST00000572270 REM2Q8IYK8 340 aaPredicted RBP17.6■□□□□ 0.41
CCDC40-208ENST00000572270 CRAMP1Q96RY5 1269 aa17.6■□□□□ 0.41
CCDC40-208ENST00000572270 CNOT7Q9UIV1 285 aaKnown RBP17.6■□□□□ 0.41
CCDC40-208ENST00000572270 PRAMEF22A3QJZ6 481 aa17.59■□□□□ 0.41
CCDC40-208ENST00000572270 DIAPH1O60610 1272 aaKnown RBP17.59■□□□□ 0.41
CCDC40-208ENST00000572270 RAD17O75943 681 aa17.59■□□□□ 0.41
CCDC40-208ENST00000572270 SLC10A3P09131 477 aa17.59■□□□□ 0.41
CCDC40-208ENST00000572270 KRT26Q7Z3Y9 468 aa17.59■□□□□ 0.41
CCDC40-208ENST00000572270 CSRNP1Q96S65 589 aa17.59■□□□□ 0.41
CCDC40-208ENST00000572270 KNSTRNQ9Y448 316 aa17.59■□□□□ 0.41
CCDC40-208ENST00000572270 SLC51AQ86UW1 340 aa17.58■□□□□ 0.4
CCDC40-208ENST00000572270 CEMIPQ8WUJ3 1361 aa17.57■□□□□ 0.4
CCDC40-208ENST00000572270 MICALL2Q8IY33 904 aa17.57■□□□□ 0.4
CCDC40-208ENST00000572270 NUP98P52948 1817 aa17.56■□□□□ 0.4
CCDC40-208ENST00000572270 IBTKQ9P2D0 1353 aaPredicted RBP17.56■□□□□ 0.4
CCDC40-208ENST00000572270 DLK2Q6UY11 383 aa17.56■□□□□ 0.4
CCDC40-208ENST00000572270 DCPSQ96C86 337 aaKnown RBP17.56■□□□□ 0.4
CCDC40-208ENST00000572270 ATP6V0A2Q9Y487 856 aa17.56■□□□□ 0.4
CCDC40-208ENST00000572270 NBPF26B4DH59 902 aa17.55■□□□□ 0.4
CCDC40-208ENST00000572270 NBPF10Q6P3W6 841 aaKnown RBP17.55■□□□□ 0.4
CCDC40-208ENST00000572270 DPP8Q6V1X1 898 aaPredicted RBP17.55■□□□□ 0.4
CCDC40-208ENST00000572270 RTFDC1Q9BY42 306 aaPredicted RBP17.55■□□□□ 0.4
CCDC40-208ENST00000572270 SHTN1A0MZ66 631 aa17.54■□□□□ 0.4
CCDC40-208ENST00000572270 FXR1P51114 621 aaKnown RBP eCLIP17.54■□□□□ 0.4
CCDC40-208ENST00000572270 KIAA2012Q0VF49 1180 aa17.54■□□□□ 0.4
CCDC40-208ENST00000572270 FBXO46Q6PJ61 603 aaPredicted RBP17.54■□□□□ 0.4
CCDC40-208ENST00000572270 ZNF296Q8WUU4 475 aaPredicted RBP17.54■□□□□ 0.4
CCDC40-208ENST00000572270 POLR2AP24928 1970 aaKnown RBP17.53■□□□□ 0.4
CCDC40-208ENST00000572270 ADM5C9JUS6 153 aa17.53■□□□□ 0.4
CCDC40-208ENST00000572270 SAMD7Q7Z3H4 446 aa17.53■□□□□ 0.4
CCDC40-208ENST00000572270 LAMB4A4D0S4 1761 aa17.53■□□□□ 0.4
CCDC40-208ENST00000572270 ERVV-1B6SEH8 477 aa17.52■□□□□ 0.4
CCDC40-208ENST00000572270 U2SURPO15042 1029 aaKnown RBP17.52■□□□□ 0.4
CCDC40-208ENST00000572270 GPTP24298 496 aa17.52■□□□□ 0.4
CCDC40-208ENST00000572270 TBC1D10BQ4KMP7 808 aaPredicted RBP17.52■□□□□ 0.4
CCDC40-208ENST00000572270 KIF6Q6ZMV9 814 aa17.52■□□□□ 0.4
CCDC40-208ENST00000572270 MPNDQ8N594 471 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms