RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 ALDH1L2Q3SY69 923 aa8.22□□□□□ -1.09
VPS53-209ENST00000570771 TBC1D9BQ66K14 1250 aa8.22□□□□□ -1.09
VPS53-209ENST00000570771 SYNE4Q8N205 404 aa8.22□□□□□ -1.09
VPS53-209ENST00000570771 CCDC24Q8N4L8 307 aa8.22□□□□□ -1.09
VPS53-209ENST00000570771 RTCBQ9Y3I0 505 aaKnown RBP8.22□□□□□ -1.09
VPS53-209ENST00000570771 COL24A1Q17RW2 1714 aa8.22□□□□□ -1.09
VPS53-209ENST00000570771 ABCC12Q96J65 1359 aa8.22□□□□□ -1.09
VPS53-209ENST00000570771 TNRC6CQ9HCJ0 1690 aaKnown RBP8.21□□□□□ -1.09
VPS53-209ENST00000570771 ARFGEF2Q9Y6D5 1785 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 MAP3K13O43283 966 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 PLIN1O60240 522 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 IGKV5-2P06315 115 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 MS4A1P11836 297 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 RLBP1P12271 317 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 FLIIQ13045 1269 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 C20orf194Q5TEA3 1177 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 C3orf67Q6ZVT6 689 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 DZIP3Q86Y13 1208 aaKnown RBP8.21□□□□□ -1.1
VPS53-209ENST00000570771 NARFQ9UHQ1 456 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 ERBB4Q15303 1308 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 MAP3K15Q6ZN16 1313 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 KIF16BQ96L93 1317 aa8.21□□□□□ -1.1
VPS53-209ENST00000570771 IPO8O15397 1037 aaKnown RBP8.2□□□□□ -1.1
VPS53-209ENST00000570771 GPTP24298 496 aa8.2□□□□□ -1.1
VPS53-209ENST00000570771 NFIXQ14938 502 aa8.2□□□□□ -1.1
VPS53-209ENST00000570771 CCDC30Q5VVM6 783 aa8.2□□□□□ -1.1
VPS53-209ENST00000570771 JARID2Q92833 1246 aaPredicted RBP8.2□□□□□ -1.1
VPS53-209ENST00000570771 STK31Q9BXU1 1019 aa8.2□□□□□ -1.1
VPS53-209ENST00000570771 TEX13AQ9BXU3 409 aaPredicted RBP8.2□□□□□ -1.1
VPS53-209ENST00000570771 SMC4Q9NTJ3 1288 aa8.2□□□□□ -1.1
VPS53-209ENST00000570771 DBF4Q9UBU7 674 aaPredicted RBP8.2□□□□□ -1.1
VPS53-209ENST00000570771 SUPT16HQ9Y5B9 1047 aaKnown RBP8.2□□□□□ -1.1
VPS53-209ENST00000570771 ATP10DQ9P241 1426 aa8.2□□□□□ -1.1
VPS53-209ENST00000570771 PI4KAP2A4QPH2 592 aa8.19□□□□□ -1.1
VPS53-209ENST00000570771 SPDYE4A6NLX3 237 aa8.19□□□□□ -1.1
VPS53-209ENST00000570771 ATP5J2-PTCD1G3V325 749 aa8.19□□□□□ -1.1
VPS53-209ENST00000570771 POLRMTO00411 1230 aaKnown RBP8.19□□□□□ -1.1
VPS53-209ENST00000570771 TRIM27P14373 513 aa8.19□□□□□ -1.1
VPS53-209ENST00000570771 HMGB2P26583 209 aaKnown RBP8.19□□□□□ -1.1
VPS53-209ENST00000570771 BRPF1P55201 1214 aaPredicted RBP8.19□□□□□ -1.1
VPS53-209ENST00000570771 CWF19L2Q2TBE0 894 aaKnown RBP8.19□□□□□ -1.1
VPS53-209ENST00000570771 TRAPPC3LQ5T215 181 aa8.19□□□□□ -1.1
VPS53-209ENST00000570771 BICDL1Q6ZP65 573 aa8.19□□□□□ -1.1
VPS53-209ENST00000570771 PI4KAP1Q8N8J0 262 aa8.19□□□□□ -1.1
VPS53-209ENST00000570771 NOB1Q9ULX3 412 aaKnown RBP8.19□□□□□ -1.1
VPS53-209ENST00000570771 KIAA1551Q9HCM1 1747 aa8.19□□□□□ -1.1
VPS53-209ENST00000570771 NRXN2Q9P2S2 1712 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 MMP10P09238 476 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 TM4SF1P30408 202 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 RRP1P56182 461 aaKnown RBP8.18□□□□□ -1.1
VPS53-209ENST00000570771 ZNF34Q8IZ26 560 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 ARXQ96QS3 562 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 ISCA1Q9BUE6 129 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 HYPKQ9NX55 129 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 MAP3K2Q9Y2U5 619 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 RNF123Q5XPI4 1314 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 PXDNLA1KZ92 1463 aa8.18□□□□□ -1.1
VPS53-209ENST00000570771 COL11A2P13942 1736 aaPredicted RBP8.17□□□□□ -1.1
VPS53-209ENST00000570771 FAM177BA6PVY3 158 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 NTSR2O95665 410 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 RFC4P35249 363 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 BEND3Q5T5X7 828 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 SUSD4Q5VX71 490 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 GIGYF2Q6Y7W6 1299 aaKnown RBP8.17□□□□□ -1.1
VPS53-209ENST00000570771 NLRP10Q86W26 655 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 NUTM1Q86Y26 1132 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 PLBD2Q8NHP8 589 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 PANK1Q8TE04 598 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 MARVELD3Q96A59 401 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 MYD88Q99836 296 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 ABCC4O15439 1325 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 C10orf71Q711Q0 1435 aa8.17□□□□□ -1.1
VPS53-209ENST00000570771 PTPRCP08575 1304 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 CASP7P55210 303 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 FKBP5Q13451 457 aaPredicted RBP8.16□□□□□ -1.1
VPS53-209ENST00000570771 PDE3AQ14432 1141 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 RTL5Q5HYW3 569 aaPredicted RBP8.16□□□□□ -1.1
VPS53-209ENST00000570771 ANKRD36CQ5JPF3 1778 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 ERICH6BQ5W0A0 696 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 ZKSCAN2Q63HK3 967 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 PRR5LQ6MZQ0 368 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 KSR2Q6VAB6 950 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 ANKRD13DQ6ZTN6 518 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 ANKRD31Q8N7Z5 1873 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 NLGN2Q8NFZ4 835 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 ARHGAP45Q92619 1136 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 FRAT1Q92837 279 aaPredicted RBP8.16□□□□□ -1.1
VPS53-209ENST00000570771 CLUAP1Q96AJ1 413 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 API5Q9BZZ5 524 aaKnown RBP8.16□□□□□ -1.1
VPS53-209ENST00000570771 MTFR1LQ9H019 292 aa8.16□□□□□ -1.1
VPS53-209ENST00000570771 NUP98P52948 1817 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 AFDNP55196 1824 aaKnown RBP8.15□□□□□ -1.1
VPS53-209ENST00000570771 N4BP2Q86UW6 1770 aaPredicted RBP8.15□□□□□ -1.1
VPS53-209ENST00000570771 LRP5O75197 1615 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 NEURL1BA8MQ27 555 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 ERVV-1B6SEH8 477 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 SNPHO15079 494 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 TCIRG1Q13488 830 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 EPHA10Q5JZY3 1008 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 KIF6Q6ZMV9 814 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms