RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PRPF38BQ5VTL8 546 aaKnown RBP14.91□□□□□ -0.02
VPS53-207ENST00000570510 TCERG1O14776 1098 aaKnown RBP14.9□□□□□ -0.02
VPS53-207ENST00000570510 IL17REQ8NFR9 667 aa14.9□□□□□ -0.02
VPS53-207ENST00000570510 NYXQ9GZU5 481 aa14.9□□□□□ -0.02
VPS53-207ENST00000570510 USP16Q9Y5T5 823 aa14.9□□□□□ -0.02
VPS53-207ENST00000570510 THSD7BQ9C0I4 1608 aa14.9□□□□□ -0.02
VPS53-207ENST00000570510 UBR2Q8IWV8 1755 aa14.89□□□□□ -0.03
VPS53-207ENST00000570510 U2SURPO15042 1029 aaKnown RBP14.89□□□□□ -0.03
VPS53-207ENST00000570510 PPIP5K2O43314 1243 aa14.89□□□□□ -0.03
VPS53-207ENST00000570510 BCL2L13Q9BXK5 485 aa14.89□□□□□ -0.03
VPS53-207ENST00000570510 GLIS2Q9BZE0 524 aaPredicted RBP14.89□□□□□ -0.03
VPS53-207ENST00000570510 GPRC5DQ9NZD1 345 aa14.89□□□□□ -0.03
VPS53-207ENST00000570510 CASP8AP2Q9UKL3 1982 aa14.89□□□□□ -0.03
VPS53-207ENST00000570510 PDE4DIPQ5VU43 2346 aa14.88□□□□□ -0.03
VPS53-207ENST00000570510 SNRPA1P09661 255 aaKnown RBP14.87□□□□□ -0.03
VPS53-207ENST00000570510 HUNKP57058 714 aa14.87□□□□□ -0.03
VPS53-207ENST00000570510 EIF4G2P78344 907 aaKnown RBP eCLIP14.87□□□□□ -0.03
VPS53-207ENST00000570510 CDC37L1Q7L3B6 337 aa14.87□□□□□ -0.03
VPS53-207ENST00000570510 RBM17Q96I25 401 aaKnown RBP14.87□□□□□ -0.03
VPS53-207ENST00000570510 KCNQ3O43525 872 aa14.86□□□□□ -0.03
VPS53-207ENST00000570510 NUTM1Q86Y26 1132 aa14.86□□□□□ -0.03
VPS53-207ENST00000570510 TRPM7Q96QT4 1865 aa14.86□□□□□ -0.03
VPS53-207ENST00000570510 LTBP1Q14766 1721 aa14.86□□□□□ -0.03
VPS53-207ENST00000570510 PPEF1O14829 653 aaPredicted RBP14.85□□□□□ -0.03
VPS53-207ENST00000570510 RGL2O15211 777 aa14.85□□□□□ -0.03
VPS53-207ENST00000570510 AOC3Q16853 763 aa14.85□□□□□ -0.03
VPS53-207ENST00000570510 ZC3H15Q8WU90 426 aaKnown RBP14.85□□□□□ -0.03
VPS53-207ENST00000570510 TNRC18O15417 2968 aaPredicted RBP14.84□□□□□ -0.03
VPS53-207ENST00000570510 GMPSP49915 693 aaPredicted RBP14.84□□□□□ -0.03
VPS53-207ENST00000570510 CRY2Q49AN0 593 aa14.84□□□□□ -0.03
VPS53-207ENST00000570510 NGEFQ8N5V2 710 aa14.84□□□□□ -0.03
VPS53-207ENST00000570510 NBPF15Q8N660 670 aa14.84□□□□□ -0.03
VPS53-207ENST00000570510 SUPT20HQ8NEM7 779 aa14.84□□□□□ -0.03
VPS53-207ENST00000570510 RTF1Q92541 710 aaKnown RBP14.84□□□□□ -0.03
VPS53-207ENST00000570510 PCGF6Q9BYE7 350 aa14.84□□□□□ -0.03
VPS53-207ENST00000570510 ZNRF3Q9ULT6 936 aa14.84□□□□□ -0.03
VPS53-207ENST00000570510 PRAMEF22A3QJZ6 481 aa14.83□□□□□ -0.04
VPS53-207ENST00000570510 H7C1D1 291 aa14.83□□□□□ -0.04
VPS53-207ENST00000570510 TRPA1O75762 1119 aa14.83□□□□□ -0.04
VPS53-207ENST00000570510 TNIP1Q15025 636 aa14.83□□□□□ -0.04
VPS53-207ENST00000570510 HLFQ16534 295 aa14.83□□□□□ -0.04
VPS53-207ENST00000570510 VPS33BQ9H267 617 aa14.83□□□□□ -0.04
VPS53-207ENST00000570510 SAGE1Q9NXZ1 904 aa14.83□□□□□ -0.04
VPS53-207ENST00000570510 NPC1L1Q9UHC9 1359 aa14.83□□□□□ -0.04
VPS53-207ENST00000570510 BCORQ6W2J9 1755 aa14.83□□□□□ -0.04
VPS53-207ENST00000570510 HOXA10P31260 410 aaPredicted RBP14.82□□□□□ -0.04
VPS53-207ENST00000570510 CXCL9Q07325 125 aa14.82□□□□□ -0.04
VPS53-207ENST00000570510 RGMBQ6NW40 437 aa14.82□□□□□ -0.04
VPS53-207ENST00000570510 USP48Q86UV5 1035 aa14.82□□□□□ -0.04
VPS53-207ENST00000570510 C2orf69Q8N8R5 385 aa14.82□□□□□ -0.04
VPS53-207ENST00000570510 CCDC102AQ96A19 550 aa14.82□□□□□ -0.04
VPS53-207ENST00000570510 GCC1Q96CN9 775 aa14.82□□□□□ -0.04
VPS53-207ENST00000570510 ZIC5Q96T25 663 aa14.82□□□□□ -0.04
VPS53-207ENST00000570510 HSPA5P11021 654 aaKnown RBP14.81□□□□□ -0.04
VPS53-207ENST00000570510 ZNF157P51786 506 aaPredicted RBP14.81□□□□□ -0.04
VPS53-207ENST00000570510 KIF6Q6ZMV9 814 aa14.81□□□□□ -0.04
VPS53-207ENST00000570510 CTU1Q7Z7A3 348 aaKnown RBP14.81□□□□□ -0.04
VPS53-207ENST00000570510 CRAMP1Q96RY5 1269 aa14.81□□□□□ -0.04
VPS53-207ENST00000570510 PGAP2Q9UHJ9 254 aa14.81□□□□□ -0.04
VPS53-207ENST00000570510 NBPF26B4DH59 902 aa14.8□□□□□ -0.04
VPS53-207ENST00000570510 RAD17O75943 681 aa14.8□□□□□ -0.04
VPS53-207ENST00000570510 KIF23Q02241 960 aaPredicted RBP14.8□□□□□ -0.04
VPS53-207ENST00000570510 NBPF10Q6P3W6 841 aaKnown RBP14.8□□□□□ -0.04
VPS53-207ENST00000570510 CNOT7Q9UIV1 285 aaKnown RBP14.8□□□□□ -0.04
VPS53-207ENST00000570510 CDHR2Q9BYE9 1310 aa14.8□□□□□ -0.04
VPS53-207ENST00000570510 COL4A5P29400 1685 aa14.8□□□□□ -0.04
VPS53-207ENST00000570510 GPTP24298 496 aa14.79□□□□□ -0.04
VPS53-207ENST00000570510 CNGB1Q14028 1251 aaPredicted RBP14.79□□□□□ -0.04
VPS53-207ENST00000570510 KIF7Q2M1P5 1343 aa14.79□□□□□ -0.04
VPS53-207ENST00000570510 AMER1Q5JTC6 1135 aaPredicted RBP14.79□□□□□ -0.04
VPS53-207ENST00000570510 CC2D1BQ5T0F9 858 aaKnown RBP14.79□□□□□ -0.04
VPS53-207ENST00000570510 DPP8Q6V1X1 898 aaPredicted RBP14.79□□□□□ -0.04
VPS53-207ENST00000570510 CEMIPQ8WUJ3 1361 aa14.79□□□□□ -0.04
VPS53-207ENST00000570510 ABCC12Q96J65 1359 aa14.79□□□□□ -0.04
VPS53-207ENST00000570510 NLRP3Q96P20 1036 aa14.79□□□□□ -0.04
VPS53-207ENST00000570510 GBA2Q9HCG7 927 aaPredicted RBP14.79□□□□□ -0.04
VPS53-207ENST00000570510 RNF186Q9NXI6 227 aa14.79□□□□□ -0.04
VPS53-207ENST00000570510 HDAC9Q9UKV0 1011 aa14.79□□□□□ -0.04
VPS53-207ENST00000570510 SNED1Q8TER0 1413 aa14.78□□□□□ -0.04
VPS53-207ENST00000570510 ERVV-1B6SEH8 477 aa14.78□□□□□ -0.04
VPS53-207ENST00000570510 KRT26Q7Z3Y9 468 aa14.78□□□□□ -0.04
VPS53-207ENST00000570510 DCPSQ96C86 337 aaKnown RBP14.78□□□□□ -0.04
VPS53-207ENST00000570510 ATP6V0A2Q9Y487 856 aa14.78□□□□□ -0.04
VPS53-207ENST00000570510 HIRAP54198 1017 aaPredicted RBP14.77□□□□□ -0.05
VPS53-207ENST00000570510 PPP1R42Q7Z4L9 355 aa14.77□□□□□ -0.05
VPS53-207ENST00000570510 MICALL2Q8IY33 904 aa14.77□□□□□ -0.05
VPS53-207ENST00000570510 TRPM4Q8TD43 1214 aa14.77□□□□□ -0.05
VPS53-207ENST00000570510 RRP7AQ9Y3A4 280 aaKnown RBP14.77□□□□□ -0.05
VPS53-207ENST00000570510 PRKAR2BP31323 418 aa14.76□□□□□ -0.05
VPS53-207ENST00000570510 PKN2Q16513 984 aaKnown RBP14.76□□□□□ -0.05
VPS53-207ENST00000570510 MCM10Q7L590 875 aa14.76□□□□□ -0.05
VPS53-207ENST00000570510 MPNDQ8N594 471 aa14.76□□□□□ -0.05
VPS53-207ENST00000570510 MAP3K15Q6ZN16 1313 aa14.75□□□□□ -0.05
VPS53-207ENST00000570510 FAM155AB1AL88 458 aaPredicted RBP14.75□□□□□ -0.05
VPS53-207ENST00000570510 SUSD4Q5VX71 490 aa14.75□□□□□ -0.05
VPS53-207ENST00000570510 REM2Q8IYK8 340 aaPredicted RBP14.75□□□□□ -0.05
VPS53-207ENST00000570510 ZBTB3Q9H5J0 574 aa14.75□□□□□ -0.05
VPS53-207ENST00000570510 HPS5Q9UPZ3 1129 aa14.75□□□□□ -0.05
VPS53-207ENST00000570510 BBOX1O75936 387 aa14.74□□□□□ -0.05
VPS53-207ENST00000570510 MYL6BP14649 208 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 227.8 ms