RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 GCC1Q96CN9 775 aa24.54■■□□□ 1.52
CLK3-227ENST00000570296 NIP7Q9Y221 180 aaKnown RBP eCLIP24.54■■□□□ 1.52
CLK3-227ENST00000570296 CRY2Q49AN0 593 aa24.53■■□□□ 1.52
CLK3-227ENST00000570296 NIM1KQ8IY84 436 aa24.53■■□□□ 1.52
CLK3-227ENST00000570296 ZIC5Q96T25 663 aa24.53■■□□□ 1.52
CLK3-227ENST00000570296 PANK3Q9H999 370 aa24.53■■□□□ 1.52
CLK3-227ENST00000570296 ZC3H15Q8WU90 426 aaKnown RBP24.52■■□□□ 1.52
CLK3-227ENST00000570296 AKAP11Q9UKA4 1901 aa24.51■■□□□ 1.51
CLK3-227ENST00000570296 ZNF408Q9H9D4 720 aa24.51■■□□□ 1.51
CLK3-227ENST00000570296 GTF2E1P29083 439 aaPredicted RBP24.49■■□□□ 1.51
CLK3-227ENST00000570296 HUNKP57058 714 aa24.49■■□□□ 1.51
CLK3-227ENST00000570296 CDC37L1Q7L3B6 337 aa24.49■■□□□ 1.51
CLK3-227ENST00000570296 NBPF15Q8N660 670 aa24.49■■□□□ 1.51
CLK3-227ENST00000570296 IL17REQ8NFR9 667 aa24.49■■□□□ 1.51
CLK3-227ENST00000570296 CDHR2Q9BYE9 1310 aa24.49■■□□□ 1.51
CLK3-227ENST00000570296 FAM177BA6PVY3 158 aa24.48■■□□□ 1.51
CLK3-227ENST00000570296 CTU1Q7Z7A3 348 aaKnown RBP24.48■■□□□ 1.51
CLK3-227ENST00000570296 NPC1L1Q9UHC9 1359 aa24.47■■□□□ 1.51
CLK3-227ENST00000570296 GNAT3A8MTJ3 354 aa24.47■■□□□ 1.51
CLK3-227ENST00000570296 HOXA10P31260 410 aaPredicted RBP24.47■■□□□ 1.51
CLK3-227ENST00000570296 PIP4K2AP48426 406 aaPredicted RBP24.47■■□□□ 1.51
CLK3-227ENST00000570296 VPS33BQ9H267 617 aa24.47■■□□□ 1.51
CLK3-227ENST00000570296 KIF7Q2M1P5 1343 aa24.46■■□□□ 1.51
CLK3-227ENST00000570296 USP16Q9Y5T5 823 aa24.46■■□□□ 1.51
CLK3-227ENST00000570296 RIC1Q4ADV7 1423 aa24.45■■□□□ 1.51
CLK3-227ENST00000570296 FAM155AB1AL88 458 aaPredicted RBP24.45■■□□□ 1.5
CLK3-227ENST00000570296 PPIP5K2O43314 1243 aa24.45■■□□□ 1.5
CLK3-227ENST00000570296 ABCC12Q96J65 1359 aa24.44■■□□□ 1.5
CLK3-227ENST00000570296 GMPSP49915 693 aaPredicted RBP24.44■■□□□ 1.5
CLK3-227ENST00000570296 CXCL9Q07325 125 aa24.44■■□□□ 1.5
CLK3-227ENST00000570296 RGMBQ6NW40 437 aa24.44■■□□□ 1.5
CLK3-227ENST00000570296 RPGRQ92834 1020 aaKnown RBP24.44■■□□□ 1.5
CLK3-227ENST00000570296 CCDC102AQ96A19 550 aa24.44■■□□□ 1.5
CLK3-227ENST00000570296 NYXQ9GZU5 481 aa24.44■■□□□ 1.5
CLK3-227ENST00000570296 RNF186Q9NXI6 227 aa24.44■■□□□ 1.5
CLK3-227ENST00000570296 ZNRF3Q9ULT6 936 aa24.44■■□□□ 1.5
CLK3-227ENST00000570296 GAS2L2Q8NHY3 880 aa24.43■■□□□ 1.5
CLK3-227ENST00000570296 CEMIPQ8WUJ3 1361 aa24.42■■□□□ 1.5
CLK3-227ENST00000570296 TRPA1O75762 1119 aa24.42■■□□□ 1.5
CLK3-227ENST00000570296 HIRAP54198 1017 aaPredicted RBP24.42■■□□□ 1.5
CLK3-227ENST00000570296 HPS5Q9UPZ3 1129 aa24.42■■□□□ 1.5
CLK3-227ENST00000570296 BTBD11A6QL63 1104 aa24.41■■□□□ 1.5
CLK3-227ENST00000570296 PPEF1O14829 653 aaPredicted RBP24.41■■□□□ 1.5
CLK3-227ENST00000570296 KCNQ3O43525 872 aa24.41■■□□□ 1.5
CLK3-227ENST00000570296 KIF23Q02241 960 aaPredicted RBP24.41■■□□□ 1.5
CLK3-227ENST00000570296 AOC3Q16853 763 aa24.41■■□□□ 1.5
CLK3-227ENST00000570296 CRAMP1Q96RY5 1269 aa24.41■■□□□ 1.5
CLK3-227ENST00000570296 DIAPH1O60610 1272 aaKnown RBP24.39■■□□□ 1.49
CLK3-227ENST00000570296 SNRPA1P09661 255 aaKnown RBP24.39■■□□□ 1.49
CLK3-227ENST00000570296 PKN2Q16513 984 aaKnown RBP24.39■■□□□ 1.49
CLK3-227ENST00000570296 HABP4Q5JVS0 413 aaKnown RBP24.39■■□□□ 1.49
CLK3-227ENST00000570296 RBM17Q96I25 401 aaKnown RBP24.39■■□□□ 1.49
CLK3-227ENST00000570296 NBPF26B4DH59 902 aa24.38■■□□□ 1.49
CLK3-227ENST00000570296 HLFQ16534 295 aa24.38■■□□□ 1.49
CLK3-227ENST00000570296 NBPF10Q6P3W6 841 aaKnown RBP24.38■■□□□ 1.49
CLK3-227ENST00000570296 USP48Q86UV5 1035 aa24.38■■□□□ 1.49
CLK3-227ENST00000570296 NUTM1Q86Y26 1132 aa24.38■■□□□ 1.49
CLK3-227ENST00000570296 TRPM4Q8TD43 1214 aa24.38■■□□□ 1.49
CLK3-227ENST00000570296 BCL2L13Q9BXK5 485 aa24.38■■□□□ 1.49
CLK3-227ENST00000570296 KNSTRNQ9Y448 316 aa24.38■■□□□ 1.49
CLK3-227ENST00000570296 NUP98P52948 1817 aa24.38■■□□□ 1.49
CLK3-227ENST00000570296 PRAMEF22A3QJZ6 481 aa24.37■■□□□ 1.49
CLK3-227ENST00000570296 TNIP1Q15025 636 aa24.37■■□□□ 1.49
CLK3-227ENST00000570296 SUPT20HQ8NEM7 779 aa24.37■■□□□ 1.49
CLK3-227ENST00000570296 TMX4Q9H1E5 349 aaPredicted RBP24.37■■□□□ 1.49
CLK3-227ENST00000570296 GBA2Q9HCG7 927 aaPredicted RBP24.37■■□□□ 1.49
CLK3-227ENST00000570296 IBTKQ9P2D0 1353 aaPredicted RBP24.37■■□□□ 1.49
CLK3-227ENST00000570296 ZNF157P51786 506 aaPredicted RBP24.36■■□□□ 1.49
CLK3-227ENST00000570296 C2orf69Q8N8R5 385 aa24.36■■□□□ 1.49
CLK3-227ENST00000570296 POLR2AP24928 1970 aaKnown RBP24.35■■□□□ 1.49
CLK3-227ENST00000570296 SLC51AQ86UW1 340 aa24.35■■□□□ 1.49
CLK3-227ENST00000570296 REM2Q8IYK8 340 aaPredicted RBP24.35■■□□□ 1.49
CLK3-227ENST00000570296 RTFDC1Q9BY42 306 aaPredicted RBP24.35■■□□□ 1.49
CLK3-227ENST00000570296 TCERG1O14776 1098 aaKnown RBP24.34■■□□□ 1.49
CLK3-227ENST00000570296 CNOT7Q9UIV1 285 aaKnown RBP24.34■■□□□ 1.49
CLK3-227ENST00000570296 H7C1D1 291 aa24.33■■□□□ 1.49
CLK3-227ENST00000570296 CSRNP1Q96S65 589 aa24.33■■□□□ 1.49
CLK3-227ENST00000570296 ATP6V0A2Q9Y487 856 aa24.33■■□□□ 1.49
CLK3-227ENST00000570296 SLC10A3P09131 477 aa24.32■■□□□ 1.48
CLK3-227ENST00000570296 ERVV-1B6SEH8 477 aa24.31■■□□□ 1.48
CLK3-227ENST00000570296 AMER1Q5JTC6 1135 aaPredicted RBP24.31■■□□□ 1.48
CLK3-227ENST00000570296 KRT26Q7Z3Y9 468 aa24.31■■□□□ 1.48
CLK3-227ENST00000570296 RAD17O75943 681 aa24.3■■□□□ 1.48
CLK3-227ENST00000570296 KIAA2012Q0VF49 1180 aa24.3■■□□□ 1.48
CLK3-227ENST00000570296 DLK2Q6UY11 383 aa24.3■■□□□ 1.48
CLK3-227ENST00000570296 LAMB4A4D0S4 1761 aa24.29■■□□□ 1.48
CLK3-227ENST00000570296 MICALL2Q8IY33 904 aa24.29■■□□□ 1.48
CLK3-227ENST00000570296 HDAC9Q9UKV0 1011 aa24.28■■□□□ 1.48
CLK3-227ENST00000570296 SHTN1A0MZ66 631 aa24.27■■□□□ 1.48
CLK3-227ENST00000570296 DPP8Q6V1X1 898 aaPredicted RBP24.27■■□□□ 1.48
CLK3-227ENST00000570296 DPF2Q92785 391 aa24.27■■□□□ 1.48
CLK3-227ENST00000570296 MKI67P46013 3256 aaKnown RBP24.27■■□□□ 1.48
CLK3-227ENST00000570296 MAP3K15Q6ZN16 1313 aa24.26■■□□□ 1.47
CLK3-227ENST00000570296 UBN2Q6ZU65 1347 aa24.26■■□□□ 1.47
CLK3-227ENST00000570296 COL3A1P02461 1466 aaPredicted RBP24.26■■□□□ 1.47
CLK3-227ENST00000570296 C3orf67Q6ZVT6 689 aa24.25■■□□□ 1.47
CLK3-227ENST00000570296 SUSD4Q5VX71 490 aa24.24■■□□□ 1.47
CLK3-227ENST00000570296 SAMD7Q7Z3H4 446 aa24.24■■□□□ 1.47
CLK3-227ENST00000570296 MPNDQ8N594 471 aa24.24■■□□□ 1.47
CLK3-227ENST00000570296 DCPSQ96C86 337 aaKnown RBP24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms