RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 SLC17A8Q8NDX2 589 aa15.5■□□□□ 0.07
CDH3-208ENST00000569036 ZC3H15Q8WU90 426 aaKnown RBP15.5■□□□□ 0.07
CDH3-208ENST00000569036 CCDC102AQ96A19 550 aa15.5■□□□□ 0.07
CDH3-208ENST00000569036 CSRNP1Q96S65 589 aa15.5■□□□□ 0.07
CDH3-208ENST00000569036 RNMTO43148 476 aaKnown RBP15.49■□□□□ 0.07
CDH3-208ENST00000569036 ALDH1B1P30837 517 aa15.49■□□□□ 0.07
CDH3-208ENST00000569036 TNNT2P45379 298 aaPredicted RBP15.49■□□□□ 0.07
CDH3-208ENST00000569036 HIRAP54198 1017 aaPredicted RBP15.49■□□□□ 0.07
CDH3-208ENST00000569036 DLK2Q6UY11 383 aa15.49■□□□□ 0.07
CDH3-208ENST00000569036 GMPSP49915 693 aaPredicted RBP15.48■□□□□ 0.07
CDH3-208ENST00000569036 ZNF157P51786 506 aaPredicted RBP15.48■□□□□ 0.07
CDH3-208ENST00000569036 NIM1KQ8IY84 436 aa15.48■□□□□ 0.07
CDH3-208ENST00000569036 HDAC9Q9UKV0 1011 aa15.48■□□□□ 0.07
CDH3-208ENST00000569036 COLQQ9Y215 455 aaPredicted RBP15.48■□□□□ 0.07
CDH3-208ENST00000569036 NPC1L1Q9UHC9 1359 aa15.48■□□□□ 0.07
CDH3-208ENST00000569036 CEP290O15078 2479 aa15.48■□□□□ 0.07
CDH3-208ENST00000569036 SLC10A3P09131 477 aa15.47■□□□□ 0.07
CDH3-208ENST00000569036 CC2D2BQ6DHV5 1058 aa15.47■□□□□ 0.07
CDH3-208ENST00000569036 FBXO46Q6PJ61 603 aaPredicted RBP15.47■□□□□ 0.07
CDH3-208ENST00000569036 USP48Q86UV5 1035 aa15.47■□□□□ 0.07
CDH3-208ENST00000569036 TRPM4Q8TD43 1214 aa15.47■□□□□ 0.07
CDH3-208ENST00000569036 GBA2Q9HCG7 927 aaPredicted RBP15.47■□□□□ 0.07
CDH3-208ENST00000569036 RBBP6Q7Z6E9 1792 aaKnown RBP15.47■□□□□ 0.07
CDH3-208ENST00000569036 SULT6B1Q6IMI4 303 aa15.46■□□□□ 0.07
CDH3-208ENST00000569036 SLC51AQ86UW1 340 aa15.46■□□□□ 0.07
CDH3-208ENST00000569036 DZIP3Q86Y13 1208 aaKnown RBP15.46■□□□□ 0.07
CDH3-208ENST00000569036 ZNF296Q8WUU4 475 aaPredicted RBP15.46■□□□□ 0.07
CDH3-208ENST00000569036 PAPPA2Q9BXP8 1791 aa15.46■□□□□ 0.07
CDH3-208ENST00000569036 CXCL9Q07325 125 aa15.45■□□□□ 0.06
CDH3-208ENST00000569036 HEG1Q9ULI3 1381 aa15.45■□□□□ 0.06
CDH3-208ENST00000569036 CDHR2Q9BYE9 1310 aa15.44■□□□□ 0.06
CDH3-208ENST00000569036 RANBP2P49792 3224 aaKnown RBP15.44■□□□□ 0.06
CDH3-208ENST00000569036 POLR2AP24928 1970 aaKnown RBP15.44■□□□□ 0.06
CDH3-208ENST00000569036 POTEFA5A3E0 1075 aa15.44■□□□□ 0.06
CDH3-208ENST00000569036 A1BGP04217 495 aa15.44■□□□□ 0.06
CDH3-208ENST00000569036 TPTE2Q6XPS3 522 aa15.44■□□□□ 0.06
CDH3-208ENST00000569036 NPM2Q86SE8 214 aaKnown RBP15.44■□□□□ 0.06
CDH3-208ENST00000569036 TTC5Q8N0Z6 440 aa15.44■□□□□ 0.06
CDH3-208ENST00000569036 C2orf69Q8N8R5 385 aa15.44■□□□□ 0.06
CDH3-208ENST00000569036 ZNF496Q96IT1 587 aaPredicted RBP15.44■□□□□ 0.06
CDH3-208ENST00000569036 KIAA0100Q14667 2235 aaKnown RBP15.43■□□□□ 0.06
CDH3-208ENST00000569036 PPIP5K2O43314 1243 aa15.43■□□□□ 0.06
CDH3-208ENST00000569036 ZEB1P37275 1124 aaPredicted RBP15.43■□□□□ 0.06
CDH3-208ENST00000569036 AOC3Q16853 763 aa15.43■□□□□ 0.06
CDH3-208ENST00000569036 CLEC4GQ6UXB4 293 aa15.43■□□□□ 0.06
CDH3-208ENST00000569036 TEX13AQ9BXU3 409 aaPredicted RBP15.43■□□□□ 0.06
CDH3-208ENST00000569036 CRY2Q49AN0 593 aa15.42■□□□□ 0.06
CDH3-208ENST00000569036 GRIPAP1Q4V328 841 aa15.42■□□□□ 0.06
CDH3-208ENST00000569036 REM2Q8IYK8 340 aaPredicted RBP15.42■□□□□ 0.06
CDH3-208ENST00000569036 SHTN1A0MZ66 631 aa15.41■□□□□ 0.06
CDH3-208ENST00000569036 FAM177BA6PVY3 158 aa15.41■□□□□ 0.06
CDH3-208ENST00000569036 CDCA8Q53HL2 280 aa15.41■□□□□ 0.06
CDH3-208ENST00000569036 PCGF6Q9BYE7 350 aa15.41■□□□□ 0.06
CDH3-208ENST00000569036 ZNRF3Q9ULT6 936 aa15.41■□□□□ 0.06
CDH3-208ENST00000569036 ZNF652Q9Y2D9 606 aa15.41■□□□□ 0.06
CDH3-208ENST00000569036 ABCC12Q96J65 1359 aa15.4■□□□□ 0.06
CDH3-208ENST00000569036 TBC1D8O95759 1140 aa15.4■□□□□ 0.06
CDH3-208ENST00000569036 KRT26Q7Z3Y9 468 aa15.4■□□□□ 0.06
CDH3-208ENST00000569036 RASAL3Q86YV0 1011 aa15.4■□□□□ 0.06
CDH3-208ENST00000569036 BCL2L13Q9BXK5 485 aa15.4■□□□□ 0.06
CDH3-208ENST00000569036 NIP7Q9Y221 180 aaKnown RBP eCLIP15.4■□□□□ 0.06
CDH3-208ENST00000569036 SIPA1L3O60292 1781 aaPredicted RBP15.39■□□□□ 0.05
CDH3-208ENST00000569036 ADM5C9JUS6 153 aa15.39■□□□□ 0.05
CDH3-208ENST00000569036 RIC1Q4ADV7 1423 aa15.39■□□□□ 0.05
CDH3-208ENST00000569036 GPR25O00155 361 aa15.38■□□□□ 0.05
CDH3-208ENST00000569036 PIP4K2AP48426 406 aaPredicted RBP15.38■□□□□ 0.05
CDH3-208ENST00000569036 ZNF790Q6PG37 636 aa15.38■□□□□ 0.05
CDH3-208ENST00000569036 CNOT7Q9UIV1 285 aaKnown RBP15.38■□□□□ 0.05
CDH3-208ENST00000569036 PPEF1O14829 653 aaPredicted RBP15.37■□□□□ 0.05
CDH3-208ENST00000569036 TRIM26Q12899 539 aaPredicted RBP15.37■□□□□ 0.05
CDH3-208ENST00000569036 NOM1Q5C9Z4 860 aaKnown RBP15.37■□□□□ 0.05
CDH3-208ENST00000569036 VPS33BQ9H267 617 aa15.37■□□□□ 0.05
CDH3-208ENST00000569036 H7C1D1 291 aa15.36■□□□□ 0.05
CDH3-208ENST00000569036 TCERG1O14776 1098 aaKnown RBP15.36■□□□□ 0.05
CDH3-208ENST00000569036 RAD17O75943 681 aa15.36■□□□□ 0.05
CDH3-208ENST00000569036 HOXA10P31260 410 aaPredicted RBP15.36■□□□□ 0.05
CDH3-208ENST00000569036 INTS3Q68E01 1043 aaKnown RBP15.36■□□□□ 0.05
CDH3-208ENST00000569036 MICALL2Q8IY33 904 aa15.36■□□□□ 0.05
CDH3-208ENST00000569036 RPGRQ92834 1020 aaKnown RBP15.36■□□□□ 0.05
CDH3-208ENST00000569036 OTUD5Q96G74 571 aa15.36■□□□□ 0.05
CDH3-208ENST00000569036 KIF7Q2M1P5 1343 aa15.36■□□□□ 0.05
CDH3-208ENST00000569036 GTF2E1P29083 439 aaPredicted RBP15.35■□□□□ 0.05
CDH3-208ENST00000569036 IL13P35225 146 aa15.35■□□□□ 0.05
CDH3-208ENST00000569036 TNIP1Q15025 636 aa15.35■□□□□ 0.05
CDH3-208ENST00000569036 RGL2O15211 777 aa15.34■□□□□ 0.05
CDH3-208ENST00000569036 EGFRP00533 1210 aa15.34■□□□□ 0.05
CDH3-208ENST00000569036 MNX1P50219 401 aaPredicted RBP15.34■□□□□ 0.05
CDH3-208ENST00000569036 MTHFSDQ2M296 383 aaKnown RBP15.34■□□□□ 0.05
CDH3-208ENST00000569036 SAMD7Q7Z3H4 446 aa15.34■□□□□ 0.05
CDH3-208ENST00000569036 FMNL2Q96PY5 1086 aa15.34■□□□□ 0.05
CDH3-208ENST00000569036 FKTNO75072 461 aa15.33■□□□□ 0.04
CDH3-208ENST00000569036 EN2P19622 333 aaPredicted RBP15.33■□□□□ 0.04
CDH3-208ENST00000569036 NUTM1Q86Y26 1132 aa15.33■□□□□ 0.04
CDH3-208ENST00000569036 DCPSQ96C86 337 aaKnown RBP15.33■□□□□ 0.04
CDH3-208ENST00000569036 CRAMP1Q96RY5 1269 aa15.33■□□□□ 0.04
CDH3-208ENST00000569036 UNC80Q8N2C7 3258 aa15.33■□□□□ 0.04
CDH3-208ENST00000569036 H0YGN5 161 aa15.32■□□□□ 0.04
CDH3-208ENST00000569036 TBC1D10BQ4KMP7 808 aaPredicted RBP15.32■□□□□ 0.04
CDH3-208ENST00000569036 RTFDC1Q9BY42 306 aaPredicted RBP15.32■□□□□ 0.04
CDH3-208ENST00000569036 PITPNM2Q9BZ72 1349 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms