RNA–Protein interactions for RNA: ENST00000567737.1

SMG1-213, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, human

TSL 3

Gene SMG1, Length 721 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG1-213	ENST00000567737	ZNF496	Q96IT1	587 aa	Predicted RBP	18.78	■□□□□ 0.6
SMG1-213	ENST00000567737	NOG	Q13253	232 aa		18.77	■□□□□ 0.6
SMG1-213	ENST00000567737	TPTE2	Q6XPS3	522 aa		18.77	■□□□□ 0.6
SMG1-213	ENST00000567737	POLR3GL	Q9BT43	218 aa		18.77	■□□□□ 0.6
SMG1-213	ENST00000567737	BCOR	Q6W2J9	1755 aa		18.76	■□□□□ 0.59
SMG1-213	ENST00000567737	ZNF408	Q9H9D4	720 aa		18.76	■□□□□ 0.59
SMG1-213	ENST00000567737	ADARB2	Q9NS39	739 aa	Known RBP	18.76	■□□□□ 0.59
SMG1-213	ENST00000567737	ZNF652	Q9Y2D9	606 aa		18.76	■□□□□ 0.59
SMG1-213	ENST00000567737	A1BG	P04217	495 aa		18.75	■□□□□ 0.59
SMG1-213	ENST00000567737	CLEC4G	Q6UXB4	293 aa		18.75	■□□□□ 0.59
SMG1-213	ENST00000567737	LARGE2	Q8N3Y3	721 aa		18.75	■□□□□ 0.59
SMG1-213	ENST00000567737	MTHFSD	Q2M296	383 aa	Known RBP	18.74	■□□□□ 0.59
SMG1-213	ENST00000567737	CC2D2B	Q6DHV5	1058 aa		18.74	■□□□□ 0.59
SMG1-213	ENST00000567737	ZNF790	Q6PG37	636 aa		18.74	■□□□□ 0.59
SMG1-213	ENST00000567737	MORC1	Q86VD1	984 aa		18.74	■□□□□ 0.59
SMG1-213	ENST00000567737	GCC1	Q96CN9	775 aa		18.74	■□□□□ 0.59
SMG1-213	ENST00000567737	GLIS2	Q9BZE0	524 aa	Predicted RBP	18.74	■□□□□ 0.59
SMG1-213	ENST00000567737	COL4A5	P29400	1685 aa		18.73	■□□□□ 0.59
SMG1-213	ENST00000567737	HMOX1	P09601	288 aa		18.72	■□□□□ 0.59
SMG1-213	ENST00000567737	TEF	Q10587	303 aa		18.72	■□□□□ 0.59
SMG1-213	ENST00000567737	NIM1K	Q8IY84	436 aa		18.72	■□□□□ 0.59
SMG1-213	ENST00000567737	FMNL2	Q96PY5	1086 aa		18.72	■□□□□ 0.59
SMG1-213	ENST00000567737	SAGE1	Q9NXZ1	904 aa		18.72	■□□□□ 0.59
SMG1-213	ENST00000567737	GPRC5D	Q9NZD1	345 aa		18.72	■□□□□ 0.59
SMG1-213	ENST00000567737	SNED1	Q8TER0	1413 aa		18.72	■□□□□ 0.59
SMG1-213	ENST00000567737	FAM177B	A6PVY3	158 aa		18.71	■□□□□ 0.59
SMG1-213	ENST00000567737	GRIPAP1	Q4V328	841 aa		18.71	■□□□□ 0.59
SMG1-213	ENST00000567737	NBPF15	Q8N660	670 aa		18.71	■□□□□ 0.59
SMG1-213	ENST00000567737	ZIC5	Q96T25	663 aa		18.71	■□□□□ 0.59
SMG1-213	ENST00000567737	NIP7	Q9Y221	180 aa	Known RBP eCLIP	18.71	■□□□□ 0.59
SMG1-213	ENST00000567737	GTF2E1	P29083	439 aa	Predicted RBP	18.7	■□□□□ 0.58
SMG1-213	ENST00000567737	SPDYE4	A6NLX3	237 aa		18.69	■□□□□ 0.58
SMG1-213	ENST00000567737	HUNK	P57058	714 aa		18.69	■□□□□ 0.58
SMG1-213	ENST00000567737	CDC37L1	Q7L3B6	337 aa		18.68	■□□□□ 0.58
SMG1-213	ENST00000567737	CTU1	Q7Z7A3	348 aa	Known RBP	18.68	■□□□□ 0.58
SMG1-213	ENST00000567737	PIP4K2A	P48426	406 aa	Predicted RBP	18.67	■□□□□ 0.58
SMG1-213	ENST00000567737	ZC3H15	Q8WU90	426 aa	Known RBP	18.67	■□□□□ 0.58
SMG1-213	ENST00000567737	PANK3	Q9H999	370 aa		18.67	■□□□□ 0.58
SMG1-213	ENST00000567737	PGAP2	Q9UHJ9	254 aa		18.67	■□□□□ 0.58
SMG1-213	ENST00000567737	PPIP5K2	O43314	1243 aa		18.66	■□□□□ 0.58
SMG1-213	ENST00000567737	RGL2	O15211	777 aa		18.65	■□□□□ 0.58
SMG1-213	ENST00000567737	TRPA1	O75762	1119 aa		18.65	■□□□□ 0.58
SMG1-213	ENST00000567737	CRY2	Q49AN0	593 aa		18.65	■□□□□ 0.58
SMG1-213	ENST00000567737	RGMB	Q6NW40	437 aa		18.65	■□□□□ 0.58
SMG1-213	ENST00000567737	RPGR	Q92834	1020 aa	Known RBP	18.65	■□□□□ 0.58
SMG1-213	ENST00000567737	RNF186	Q9NXI6	227 aa		18.65	■□□□□ 0.58
SMG1-213	ENST00000567737	NPC1L1	Q9UHC9	1359 aa		18.65	■□□□□ 0.58
SMG1-213	ENST00000567737	GMPS	P49915	693 aa	Predicted RBP	18.64	■□□□□ 0.57
SMG1-213	ENST00000567737	CCDC102A	Q96A19	550 aa		18.64	■□□□□ 0.57
SMG1-213	ENST00000567737	GNAT3	A8MTJ3	354 aa		18.63	■□□□□ 0.57
SMG1-213	ENST00000567737	KIF23	Q02241	960 aa	Predicted RBP	18.63	■□□□□ 0.57
SMG1-213	ENST00000567737	IL17RE	Q8NFR9	667 aa		18.63	■□□□□ 0.57
SMG1-213	ENST00000567737	HPS5	Q9UPZ3	1129 aa		18.63	■□□□□ 0.57
SMG1-213	ENST00000567737	USP16	Q9Y5T5	823 aa		18.63	■□□□□ 0.57
SMG1-213	ENST00000567737	CDHR2	Q9BYE9	1310 aa		18.63	■□□□□ 0.57
SMG1-213	ENST00000567737	FAM155A	B1AL88	458 aa	Predicted RBP	18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	PPEF1	O14829	653 aa	Predicted RBP	18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	CXCL9	Q07325	125 aa		18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	AOC3	Q16853	763 aa		18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	HABP4	Q5JVS0	413 aa	Known RBP	18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	BCL2L13	Q9BXK5	485 aa		18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	NYX	Q9GZU5	481 aa		18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	TMX4	Q9H1E5	349 aa	Predicted RBP	18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	VPS33B	Q9H267	617 aa		18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	ZNRF3	Q9ULT6	936 aa		18.62	■□□□□ 0.57
SMG1-213	ENST00000567737	ABCC12	Q96J65	1359 aa		18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	BTBD11	A6QL63	1104 aa		18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	TCERG1	O14776	1098 aa	Known RBP	18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	KCNQ3	O43525	872 aa		18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	HOXA10	P31260	410 aa	Predicted RBP	18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	HIRA	P54198	1017 aa	Predicted RBP	18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	PKN2	Q16513	984 aa	Known RBP	18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	USP48	Q86UV5	1035 aa		18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	NUTM1	Q86Y26	1132 aa		18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	C2orf69	Q8N8R5	385 aa		18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	GAS2L2	Q8NHY3	880 aa		18.6	■□□□□ 0.57
SMG1-213	ENST00000567737	KIF7	Q2M1P5	1343 aa		18.59	■□□□□ 0.57
SMG1-213	ENST00000567737	ZNF157	P51786	506 aa	Predicted RBP	18.59	■□□□□ 0.57
SMG1-213	ENST00000567737	TRPM4	Q8TD43	1214 aa		18.59	■□□□□ 0.57
SMG1-213	ENST00000567737	RBM17	Q96I25	401 aa	Known RBP	18.59	■□□□□ 0.57
SMG1-213	ENST00000567737	GBA2	Q9HCG7	927 aa	Predicted RBP	18.59	■□□□□ 0.57
SMG1-213	ENST00000567737	SPDYE2B	A6NHP3	402 aa		18.58	■□□□□ 0.56
SMG1-213	ENST00000567737	SPDYE6	P0CI01	402 aa		18.58	■□□□□ 0.56
SMG1-213	ENST00000567737	TNIP1	Q15025	636 aa		18.58	■□□□□ 0.56
SMG1-213	ENST00000567737	HLF	Q16534	295 aa		18.58	■□□□□ 0.56
SMG1-213	ENST00000567737	SPDYE2	Q495Y8	402 aa		18.58	■□□□□ 0.56
SMG1-213	ENST00000567737	SUPT20H	Q8NEM7	779 aa		18.58	■□□□□ 0.56
SMG1-213	ENST00000567737	CRAMP1	Q96RY5	1269 aa		18.58	■□□□□ 0.56
SMG1-213	ENST00000567737	SIPA1L3	O60292	1781 aa	Predicted RBP	18.58	■□□□□ 0.56
SMG1-213	ENST00000567737	PRAMEF22	A3QJZ6	481 aa		18.57	■□□□□ 0.56
SMG1-213	ENST00000567737	DIAPH1	O60610	1272 aa	Known RBP	18.57	■□□□□ 0.56
SMG1-213	ENST00000567737	SNRPA1	P09661	255 aa	Known RBP	18.57	■□□□□ 0.56
SMG1-213	ENST00000567737	RIC1	Q4ADV7	1423 aa		18.57	■□□□□ 0.56
SMG1-213	ENST00000567737		H7C1D1	291 aa		18.56	■□□□□ 0.56
SMG1-213	ENST00000567737	SLC51A	Q86UW1	340 aa		18.56	■□□□□ 0.56
SMG1-213	ENST00000567737	CNOT7	Q9UIV1	285 aa	Known RBP	18.56	■□□□□ 0.56
SMG1-213	ENST00000567737	HDAC9	Q9UKV0	1011 aa		18.56	■□□□□ 0.56
SMG1-213	ENST00000567737	KNSTRN	Q9Y448	316 aa		18.56	■□□□□ 0.56
SMG1-213	ENST00000567737	RAD17	O75943	681 aa		18.55	■□□□□ 0.56
SMG1-213	ENST00000567737	DLK2	Q6UY11	383 aa		18.55	■□□□□ 0.56

Retrieved 100 of 20,778 RNA–protein pairs in 137.3 ms