RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 PTCH1Q13635 1447 aa13.69□□□□□ -0.22
CDH1-210ENST00000566612 NLRP1Q9C000 1473 aa13.69□□□□□ -0.22
CDH1-210ENST00000566612 NPHP3Q7Z494 1330 aa13.69□□□□□ -0.22
CDH1-210ENST00000566612 BEND3Q5T5X7 828 aa13.69□□□□□ -0.22
CDH1-210ENST00000566612 MTMR7Q9Y216 660 aa13.69□□□□□ -0.22
CDH1-210ENST00000566612 MAP3K11Q16584 847 aa13.68□□□□□ -0.22
CDH1-210ENST00000566612 CREB3L3Q68CJ9 461 aa13.68□□□□□ -0.22
CDH1-210ENST00000566612 DHX16O60231 1041 aaKnown RBP13.68□□□□□ -0.22
CDH1-210ENST00000566612 SYT1P21579 422 aa13.68□□□□□ -0.22
CDH1-210ENST00000566612 TIMM10P62072 90 aa13.68□□□□□ -0.22
CDH1-210ENST00000566612 GAS2L3Q86XJ1 694 aa13.68□□□□□ -0.22
CDH1-210ENST00000566612 ZNF396Q96N95 335 aaPredicted RBP13.68□□□□□ -0.22
CDH1-210ENST00000566612 HOXB7P09629 217 aa13.68□□□□□ -0.22
CDH1-210ENST00000566612 TRMT112Q9UI30 125 aaKnown RBP13.68□□□□□ -0.22
CDH1-210ENST00000566612 USP16Q9Y5T5 823 aa13.68□□□□□ -0.22
CDH1-210ENST00000566612 LDHAL6AQ6ZMR3 332 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 CCDC34Q96HJ3 373 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 CFAP45Q9UL16 551 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 SAFBQ15424 915 aaKnown RBP eCLIP13.67□□□□□ -0.22
CDH1-210ENST00000566612 IMMTQ16891 758 aaKnown RBP13.67□□□□□ -0.22
CDH1-210ENST00000566612 CTNNA3Q9UI47 895 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 VWDEQ8N2E2 1590 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 IQSEC2Q5JU85 1478 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 CHST3Q7LGC8 479 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 DCAF5Q96JK2 942 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 LMBRD1Q9NUN5 540 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 MROH2AA6NES4 1674 aa13.67□□□□□ -0.22
CDH1-210ENST00000566612 UBE2HP62256 183 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 FAM173BQ6P4H8 233 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 CCDC129Q6ZRS4 1044 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 INTS4Q96HW7 963 aaKnown RBP13.66□□□□□ -0.22
CDH1-210ENST00000566612 ADAMTS2O95450 1211 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 CPSF1Q10570 1443 aaKnown RBP13.66□□□□□ -0.22
CDH1-210ENST00000566612 SCAND2PQ9GZW5 306 aaPredicted RBP13.66□□□□□ -0.22
CDH1-210ENST00000566612 RBSNQ9H1K0 784 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 F13A1P00488 732 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 BICDL1Q6ZP65 573 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 VSIG10Q8N0Z9 540 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 ZNF830Q96NB3 372 aaPredicted RBP13.66□□□□□ -0.22
CDH1-210ENST00000566612 IBTKQ9P2D0 1353 aaPredicted RBP13.66□□□□□ -0.22
CDH1-210ENST00000566612 PIK3C2BO00750 1634 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 A1BGP04217 495 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 CCDC82Q8N4S0 544 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 DBNDD2Q9BQY9 259 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 AKAP2Q9Y2D5 859 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 KIAA1210Q9ULL0 1709 aa13.66□□□□□ -0.22
CDH1-210ENST00000566612 CCDC171Q6TFL3 1326 aa13.65□□□□□ -0.22
CDH1-210ENST00000566612 PES1O00541 588 aaKnown RBP13.65□□□□□ -0.22
CDH1-210ENST00000566612 SLC52A2Q9HAB3 445 aa13.65□□□□□ -0.22
CDH1-210ENST00000566612 SETD1BQ9UPS6 1966 aaKnown RBP13.65□□□□□ -0.22
CDH1-210ENST00000566612 HSP90AB3PQ58FF7 597 aa13.65□□□□□ -0.22
CDH1-210ENST00000566612 EAF2Q96CJ1 260 aaPredicted RBP13.65□□□□□ -0.22
CDH1-210ENST00000566612 ABCF2Q9UG63 623 aa13.65□□□□□ -0.22
CDH1-210ENST00000566612 RAD50Q92878 1312 aa13.65□□□□□ -0.22
CDH1-210ENST00000566612 CDK11BP21127 795 aaKnown RBP13.64□□□□□ -0.23
CDH1-210ENST00000566612 HSPA4P34932 840 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 GCKRQ14397 625 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 Q6ZUG5 572 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 MED14O60244 1454 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 GADD45BO75293 160 aaPredicted RBP13.64□□□□□ -0.23
CDH1-210ENST00000566612 PTH1RQ03431 593 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 FILIP1Q7Z7B0 1213 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 NUP133Q8WUM0 1156 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 METTL22Q9BUU2 404 aaPredicted RBP13.64□□□□□ -0.23
CDH1-210ENST00000566612 ADCY5O95622 1261 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 CLCN1P35523 988 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 MCMDC2Q4G0Z9 681 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 AIDAQ96BJ3 306 aa13.64□□□□□ -0.23
CDH1-210ENST00000566612 ZNF594Q96JF6 807 aaPredicted RBP13.64□□□□□ -0.23
CDH1-210ENST00000566612 SMC2O95347 1197 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 RUFY3Q7L099 469 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 ARHGEF25Q86VW2 580 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 RASEFQ8IZ41 740 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 OSBPL3Q9H4L5 887 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 CPS1P31327 1500 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 TPD52L1Q16890 204 aaPredicted RBP13.63□□□□□ -0.23
CDH1-210ENST00000566612 LRP2BPQ9P2M1 347 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 TDO2P48775 406 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 SART3Q15020 963 aaKnown RBP13.63□□□□□ -0.23
CDH1-210ENST00000566612 NAT10Q9H0A0 1025 aaKnown RBP13.63□□□□□ -0.23
CDH1-210ENST00000566612 HMG20BQ9P0W2 317 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 FRMPD1Q5SYB0 1578 aa13.63□□□□□ -0.23
CDH1-210ENST00000566612 ZNF213O14771 459 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 HOMER1Q86YM7 354 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 TMEM63CQ9P1W3 806 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 DEPDC5O75140 1603 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 VPS53Q5VIR6 699 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 CCDC144CPQ8IYA2 1237 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 POLR3DP05423 398 aaPredicted RBP13.62□□□□□ -0.23
CDH1-210ENST00000566612 ZSCAN25Q6NSZ9 544 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 KIF2CQ99661 725 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 UQCRHLA0A096LP55 91 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 UQCRHP07919 91 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 FAM89AQ96GI7 184 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 PAG1Q9NWQ8 432 aa13.62□□□□□ -0.23
CDH1-210ENST00000566612 MROH1Q8NDA8 1641 aa13.61□□□□□ -0.23
CDH1-210ENST00000566612 GOLGA8BA8MQT2 603 aa13.61□□□□□ -0.23
CDH1-210ENST00000566612 TPM2P07951 284 aa13.61□□□□□ -0.23
CDH1-210ENST00000566612 STAP2Q9UGK3 403 aa13.61□□□□□ -0.23
CDH1-210ENST00000566612 MYO3AQ8NEV4 1616 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms